Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1638
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0963 + 26368959-26369462,26370900-26371205                       32   0.26 
05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871...    30   1.1  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    27   7.5  

>06_03_0963 + 26368959-26369462,26370900-26371205
          Length = 269

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 125 LRNLICKCTIFLWIYILHFFITNVMGIYVFTVF 223
           L   +C  +  LW+Y+L  F+  ++ ++VFTVF
Sbjct: 62  LAGALCGASCLLWLYLLALFLL-ILALFVFTVF 93


>05_03_0620 -
           16286207-16286342,16286861-16286955,16287051-16287158,
           16287262-16287357,16287446-16287604
          Length = 197

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 36  NWQRITFFKLKFTNVLVIAIFRYCTFFKLILEI*YANVRYF 158
           NW R+ +FK KF    +  +F Y  F  ++L   + N R F
Sbjct: 126 NWMRLRWFKRKFVETYLQFMFTYLFFPGMMLWAPFVNFRKF 166


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 130 KSDMQMYDIFVDLHFTFFYYKR--NGYLRIYCLQKFMPWHIHIAYKENRTHPAFICLKKY 303
           + D Q Y      H+ +   +     + + +  QK     + + Y +++THPA +  KKY
Sbjct: 458 RKDQQQYWFLEQDHYRYVSVEEFAQNFKKFHVGQKLQK-ELQVPYDKSKTHPAALTTKKY 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,964
Number of Sequences: 37544
Number of extensions: 212897
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)