Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1638
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical
           protein C46F4.1 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 18  TRYA*RNWQRITFFK-LKFTNVLVIAIFRYC 107
           TRY   N    T F  + FT  +V+A+FRYC
Sbjct: 108 TRYRFFNVNLNTVFHTIAFTTTIVVAVFRYC 138


>Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical
           protein C08H9.14 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 229 ISEDSKYVDTHYVCNKKM*NVNPQKYRTFAYQISKINLKNVQYRKMAI--TNTLVNFSLK 56
           I++ S Y+       KK+ N+  +  R+  Y IS I   +  + +     T  L N    
Sbjct: 161 ITDQSNYLIFIRELRKKLTNLKDENGRSNEYVISVIAPSSSSHSEYPYKWTEILENVDFI 220

Query: 55  NVILCQFLYAYRVLGPY 5
           NVI  ++ Y    +GP+
Sbjct: 221 NVITFEYFYEANKIGPH 237


>Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical
           protein W07G4.1 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 137 ICKCTIFLWIYILHFFITNVMGIYVF 214
           +CK  +FL + IL  FI N++ I +F
Sbjct: 7   VCKNIVFLSLRILETFIKNILEISIF 32


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 130 KSDMQMYDIFVDLHFTFF 183
           + DMQ+ DIF D HF +F
Sbjct: 597 RRDMQINDIFCDWHFEYF 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,331
Number of Sequences: 27780
Number of extensions: 239242
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)