Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1635
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    30   0.62 
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    29   1.9  
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259...    27   5.7  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    27   7.6  
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841...    27   7.6  
08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478     27   7.6  

>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 252  VRGCVDGVTSCYRAPLP 302
            +  C+  VTSCY+APLP
Sbjct: 1563 ILNCITNVTSCYKAPLP 1579


>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
            25979135-25979254,25979357-25979532,25979624-25980107,
            25980541-25980744,25981671-25981877,25982179-25982271,
            25982433-25982621,25983364-25983423,25983591-25983927,
            25984195-25984432,25984614-25984816,25985549-25986554,
            25987125-25987290,25987715-25987824,25987944-25988195,
            25988360-25988402,25988488-25988550,25989512-25989624,
            25990787-25990838
          Length = 1824

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 399  LCPHYLFDDKTFDERLKLLRQHPPDGGHVYNVQVE 295
            LCP Y  D +T +  +  +R HPPD   V N Q++
Sbjct: 1399 LCPKYGEDPETSEMDVNSIRSHPPD--IVSNAQIK 1431


>03_06_0153 -
           32024787-32024892,32024997-32025079,32025159-32025978,
           32026122-32026327,32026887-32026975,32027132-32027192,
           32027297-32027416
          Length = 494

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 396 CPHYLFDDKTFDERLKLLRQHPPDGGHVYNVQVEGLGSSW 277
           C   + DD  F E LK      P G H  ++  + + SSW
Sbjct: 123 CLPAISDDLQFMEGLKAEACQTPSGSHQSSILPDAMSSSW 162


>11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,
            7921808-7922407
          Length = 1071

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 214  MFAPNIKLWLCLGCVVVSMVLPAATE 291
            + AP + LWL +G  ++S++LPA T+
Sbjct: 1021 VLAPRL-LWLAIGICLLSVLLPAITK 1045


>09_04_0600 +
           18883094-18883393,18883606-18883755,18883851-18884142,
           18884697-18884858,18884958-18885021,18887573-18888080
          Length = 491

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 269 WCYQLLPSPSTWTL*TWPPSGGCC 340
           WC  L    +T+ L    PSG CC
Sbjct: 466 WCMLLYSDTTTYGLNVTAPSGACC 489


>08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478
          Length = 200

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 194 GESHNTKTDTDTEHRARNSNLKGEVKLIISIK 99
           G++ +T TDTDTE    +  +K  +++ I+ K
Sbjct: 54  GQAADTDTDTDTESHKHHDEVKVPMRMAIAHK 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,781,416
Number of Sequences: 37544
Number of extensions: 194976
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)