Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1635
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    27   5.2  
U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical p...    26   9.1  
Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    26   9.1  
AC006805-1|AAK68515.1|  129|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 204 KKDDVCT*YKAMALSGVRGCVDGVTSCYRA 293
           +KDD+   YKA  LSG++G  D + SC  A
Sbjct: 203 EKDDMTNLYKA--LSGMQGLSDQIQSCMTA 230


>U23511-14|AAC46799.1|  357|Caenorhabditis elegans Hypothetical
           protein C32D5.12 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 SGVRGCVDGVTSCYRAPLPGHYRHGRHQEDVV 341
           + +RGC DGV  C  +P P  Y   + Q +++
Sbjct: 61  NALRGC-DGVIHCAHSPFPIFYSKDKEQNNLM 91


>Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 275 YQLLPSPSTWTL*TWPPSGGCCRNN 349
           Y+LL  P TW    W  +GG   +N
Sbjct: 456 YELLAKPGTWVHTNWTGTGGRVTSN 480


>Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 275 YQLLPSPSTWTL*TWPPSGGCCRNN 349
           Y+LL  P TW    W  +GG   +N
Sbjct: 456 YELLAKPGTWVHTNWTGTGGRVTSN 480


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 270 GVTSCYRAPLPGHYRHGRHQEDVVVTTLSAXXXXXXXXDNEDKEI 404
           GV SC   PL  +      +ED+V++ LS         + E+KE+
Sbjct: 454 GVMSCVTKPLKRNRASEVVREDMVLSPLSLEMFQPRGEEGEEKEV 498


>AC006805-1|AAK68515.1|  129|Caenorhabditis elegans Hypothetical
           protein Y54B9A.1 protein.
          Length = 129

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = -1

Query: 296 RGSVAAGNTIDTTTHPRQSHSFILGANIILFIVNGESHNTKTDTDTEHRARNSNLKGEVK 117
           RG    G T    TH  ++H    G         GE+H  +T     HR +  N  G+ K
Sbjct: 51  RGETHRGETHRGETHRGETHR---GETHRGETYRGETHRGETHRGETHRGKTQNFGGKFK 107

Query: 116 LII 108
             +
Sbjct: 108 FSV 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,328,996
Number of Sequences: 27780
Number of extensions: 164011
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)