Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1634
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984...    29   1.7  
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    28   3.0  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    27   6.9  
01_01_0100 - 755894-756662,757086-757598,758718-761050                 26   9.1  

>11_06_0718 -
           26592786-26593856,26597401-26597451,26597977-26598423,
           26599748-26599815,26599965-26600052
          Length = 574

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 172 IVFKNLFRCYXNFNIKERTKKKYHITI 252
           ++  + F CY    +K+R  KKY+ TI
Sbjct: 19  LIMSSTFSCYAELQLKKRWTKKYYSTI 45


>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 6   NLGLIEEHYDLFIIYCYQN*IISS*LAHDYVTPSWRQSW 122
           NL LI     +F + CY    +S  L      PSWR  W
Sbjct: 442 NLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRW 480


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 6   NLGLIEEHYDLFIIYCYQN*IISS*LAHDYVTPSWRQSW 122
           NL +I     +F + CY    +S  L      PSWR  W
Sbjct: 434 NLDVITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRW 472


>01_01_0100 - 755894-756662,757086-757598,758718-761050
          Length = 1204

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 383 RFHDNITYLKKYTSASIRYTILYILYLDXNKFYTNLTVVSEYKK 252
           R H+NI   K++   S++ T+++   +    +  N+  +SE +K
Sbjct: 768 RNHNNIRTKKRFLQQSVQTTVIHEQGITFIPYQNNVPYISEVRK 811


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,170,999
Number of Sequences: 37544
Number of extensions: 128392
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)