Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1634
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    30   0.65 
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    27   4.6  

>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 380 FHDNITYLKKY----TSASIRYTILYILYLDXNKFYTNLTVVSEY 258
           F++NI Y  ++    T+  I Y ILY++++    FY N +  + Y
Sbjct: 13  FNENIHYFYQFAYLFTAICINYRILYVIWVSQRHFYRNQSFYNLY 57


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 205 NFNIKERTKKKYHITIFLYSLTTVRFV*NLFXSKYSIYNIVYLMEADVYFFKYVML 372
           NF I   +KKK  I + L ++T   F+ ++F   + + ++   +   +YF   + L
Sbjct: 65  NFKIFFNSKKKLPILLLLLTITLFWFISSIFALIFVLQDLKRYLRFHIYFNSVITL 120


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 103 PPGAKAGSALA------HNNRVIDRFESSIVFKNLFRCYXNFNIKERTKK 234
           PPG   G   A      ++ RV + F++   F   F C  N N+  +TK+
Sbjct: 630 PPGGSTGELTAKDARQHYSTRVNEAFKNMPQFAKAFGCSSNQNMNSKTKR 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,696,179
Number of Sequences: 27780
Number of extensions: 135513
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)