Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1632
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VCN5 Cluster: Putative uncharacterized protein; n=1; ...    38   0.15 
UniRef50_Q9MJ72 Cluster: ORF10; n=1; Physarum polycephalum|Rep: ...    33   4.4  
UniRef50_Q9Z7G7 Cluster: Exodeoxyribonuclease V beta chain; n=6;...    33   5.8  

>UniRef50_A4VCN5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 243

 Score = 38.3 bits (85), Expect = 0.15
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 310 KLISILSVHSTIV*NVKIRTLYIINQFKCLITFFLFWSFFIIRLSITIMNVI 465
           KL SI+     I+ N+  R LY+I    C   +FLF  F ++  +I +++++
Sbjct: 51  KLKSIIQTCRNIITNICYRVLYLIQTISCFFRYFLFNLFILVFFTIILLSIV 102


>UniRef50_Q9MJ72 Cluster: ORF10; n=1; Physarum polycephalum|Rep:
           ORF10 - Physarum polycephalum (Slime mold)
          Length = 376

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 4   IPNVYTY*LNFEYFWKLYYTLLMRKDEMSLKTNSFSPVNMFLFYLLIKCKQHIIYVLYI 180
           IP+ Y Y  ++ Y W   YT + +     L  N F   N F+ +L  KC + +  +LYI
Sbjct: 109 IPDEYYYDDHYIYDWIYNYTFVTK-----LSLNLFIYQNTFMIHLFFKCSKKMFRLLYI 162


>UniRef50_Q9Z7G7 Cluster: Exodeoxyribonuclease V beta chain; n=6;
            Chlamydophila|Rep: Exodeoxyribonuclease V beta chain -
            Chlamydia pneumoniae (Chlamydophila pneumoniae)
          Length = 1050

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 312  FLLSITKKKRTSPKHNLIVAKRHFY*LHRTRVSILNDLIIIIFHYVQDIYYVLLTFYKEI 133
            FLL   K  ++ P   L ++K+      +T + I   L  I F  +QD  Y++ T  + I
Sbjct: 825  FLLDTHKDSQSIPYSKLPISKQQLPLGEKTGILIHKILESIQFSLLQDTEYLMSTIMRFI 884

Query: 132  KKKHIDG 112
            K  H++G
Sbjct: 885  KHTHLEG 891


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,620,814
Number of Sequences: 1657284
Number of extensions: 9317770
Number of successful extensions: 20266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20254
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)