Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1632
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical p...    30   1.6  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    28   4.9  

>Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical
           protein C55A1.15 protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/73 (23%), Positives = 38/73 (52%)
 Frame = +1

Query: 253 RNDQIMFWTCSFFFCYR*QKLISILSVHSTIV*NVKIRTLYIINQFKCLITFFLFWSFFI 432
           R+ +I+ +  +  FC    K+  ++ V ++I+ +V    LY++N    +I FF F  F +
Sbjct: 55  RDKEILIYPITKHFCQM-VKIFYLIFVFASIILSV-FEKLYLLNVIIPVIVFFCFGLFIL 112

Query: 433 IRLSITIMNVICY 471
           +     + +V+ +
Sbjct: 113 LYTITQVFHVLIF 125


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 204 DLIIIIFHYVQDIYYVLLTFYKEIKKKHIDG 112
           +LI++I H   +I+++LL  YK  +K    G
Sbjct: 31  ELILLIIHVSNNIFFILLFIYKRPRKPENPG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,439
Number of Sequences: 27780
Number of extensions: 254010
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)