Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1632
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +2

Query: 524 NKVAFSVPISVCPYVC 571
           N     VP+  CP++C
Sbjct: 224 NTTTIFVPVKPCPWIC 239


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 426 KRPKQKKSN*TFKLINNVQSSDFYILHNC 340
           KRPK KKS  +    N ++ +    L NC
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAHLRNC 67


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 232 TSNQGVYFKRFNYYYFSLCTRH 167
           T  Q  YF      Y SLC RH
Sbjct: 33  TKLQPTYFHHTYIIYESLCGRH 54


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 232 TSNQGVYFKRFNYYYFSLCTRH 167
           T  Q  YF      Y SLC RH
Sbjct: 33  TKLQPTYFHHTYIIYESLCGRH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,948
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)