Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1629
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.11c |||transcription factor TFIIA complex small subunit ...   106   4e-24
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    32   0.070
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.37 
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.0  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.6  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.0  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.0  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   8.0  

>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score =  106 bits (254), Expect = 4e-24
 Identities = 51/97 (52%), Positives = 71/97 (73%)
 Frame = +1

Query: 100 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGK 279
           Y+LYR + I  +L ++LD+LI  G+I+P LA+KVL  FDKS+ +AL+ +V+SRLTFK G 
Sbjct: 5   YELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK-GH 61

Query: 280 LNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 390
           L+TYRFCD VWTF++ +  FR   E     K++IVAC
Sbjct: 62  LDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 680 GMCCKAIKLGNARGFPSHDVVKRRPVNCNTTHY----RANWVPGPPFLNTT 540
           G+C  ++ L +    P H  VKR PV  N ++      +  VP PPF+NTT
Sbjct: 10  GICLVSL-LSSTNAAPRHLYVKRYPVIYNASNITEVSNSTTVPPPPFVNTT 59


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +3

Query: 36  IKTYEILLFFI*LQCNLNSDVISIIQKYHYW*YTSRKPRRADPIWTNNTSTSSKSFAAIR 215
           +K+  +++      C++NS  +S    Y YW  TS     +  ++TN TS+S+ + ++I 
Sbjct: 326 VKSSSVVIVQSETSCSINSASMSSNTTYFYWNSTS---SLSSSVFTNTTSSSNSTNSSIP 382

Query: 216 QIY 224
             Y
Sbjct: 383 TTY 385


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 24/109 (22%), Positives = 44/109 (40%)
 Frame = +1

Query: 1   FINFINLLLFRVLKHTKYFYFLFNCSVI*TVMSYQLYRNTTIGNTLQESLDELIQYGQIT 180
           F  F+N  L  +L++  Y Y   N   +  ++  Q  R   + N       ++  Y  IT
Sbjct: 457 FTRFVNESLIPILRNDYYVYLSHNLLTVCNIIKAQFQR---LKNANSIPAKQVENY--IT 511

Query: 181 PALAVKVLLQFDKSINQALSNRVKSRLTFKAGKLNTYRFCDNVWTFMLN 327
              +  +  Q+ KSI   +S+R++    F   +    +  DN     +N
Sbjct: 512 LVNSASLSKQYLKSIVDGVSSRLEEVFAFAKDQKLVKKSIDNFLQLTVN 560


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 100 YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTF 267
           + LY+     N + + L ++ QYG+ +  L    L  +DK I ++    +K+R  F
Sbjct: 224 FLLYKKPPSSNGVLKPLKDVFQYGRCSSLLVRSQLDCYDKKIPESGVFDLKTRAVF 279


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 450  IKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYII 301
            IK S +      AVVN  T T   + F HLG+  YFS  + I+  + + +
Sbjct: 3052 IKGSSIYDAVAQAVVN--THTSIVWEFKHLGKTSYFSCLHFIRFLNTFCL 3099


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 402 IFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYIITKPVCVKFSCF 268
           I TI  Y  + FHL  F  F + N +     +I  KPV V    F
Sbjct: 344 INTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLF 388


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 419  YLRSSTFLPSHATILTFSTLANSCTSRNSTSFNIK-VHTLSQNLY 288
            + R  + L      +  S L   C S N+TSF+++ V +L + LY
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKSLKETLY 1277


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -3

Query: 405 NIFTITCYYFNFFHLGQFLYFSKFNIIQHKSP 310
           ++F ++C  ++F  +    YF++F ++++ SP
Sbjct: 3   HLFILSCSVYDFSSILLHQYFTQFFVLRYASP 34


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
 Frame = -3

Query: 441 SKLISYRLSAVVNIFT------ITCYYFNF------FHLGQFLYFSKFNIIQHKSPYIIT 298
           SKLI+ + + ++  F       ITC  F        F++    +F K+ I ++K+P  +T
Sbjct: 7   SKLINLQFNIILTFFVYEWNHDITCLNFKVKKRRGDFYVINERFFIKYIIKKNKNPQNLT 66

Query: 297 KPVC 286
           K +C
Sbjct: 67  KSIC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,038
Number of Sequences: 5004
Number of extensions: 52406
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)