Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1629
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144    117   8e-27
05_01_0056 + 406039-406167,406262-406312,406474-406479                 70   2e-12

>01_07_0332 + 42811828-42811956,42812043-42812093,42812995-42813144
          Length = 109

 Score =  117 bits (282), Expect = 8e-27
 Identities = 52/106 (49%), Positives = 79/106 (74%)
 Frame = +1

Query: 97  SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAG 276
           +++LYR +TIG  L ++LD+++  G ++P LA++VL+QFDKS+  AL ++VKS++T K G
Sbjct: 3   TFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK-G 61

Query: 277 KLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDDR 414
            L+TYRFCDNVWTF+L D  F+  +    + KVKIVACD K ++ +
Sbjct: 62  HLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETK 107


>05_01_0056 + 406039-406167,406262-406312,406474-406479
          Length = 61

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 29/58 (50%), Positives = 47/58 (81%)
 Frame = +1

Query: 97  SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFK 270
           +++LYR +TIG  L E+LDE++  G ++P LA++VL+QFDKS+ +AL N+VKS+++ K
Sbjct: 3   TFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,020
Number of Sequences: 37544
Number of extensions: 297800
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)