Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1629
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-9|CAC35842.1|  113|Caenorhabditis elegans Hypothetical ...   113   1e-25
U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z81124-4|CAB03372.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    29   4.3  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AL132904-9|CAC35842.1|  113|Caenorhabditis elegans Hypothetical
           protein Y111B2A.13 protein.
          Length = 113

 Score =  113 bits (272), Expect = 1e-25
 Identities = 47/101 (46%), Positives = 74/101 (73%)
 Frame = +1

Query: 97  SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAG 276
           +YQLYRNTT+G  LQ++LD+ +    I  +L+ K++  FDKSIN+ L ++ K+++ F+A 
Sbjct: 5   NYQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRAD 64

Query: 277 KLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVACDGK 399
           KL  YR+CDNVWTF++  ++ R+  E   V+++KIVACDG+
Sbjct: 65  KLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQ 105


>U32305-4|AAK18861.1|  139|Caenorhabditis elegans Hypothetical
           protein B0336.13 protein.
          Length = 139

 Score =  107 bits (256), Expect = 1e-23
 Identities = 49/103 (47%), Positives = 73/103 (70%), Gaps = 2/103 (1%)
 Frame = +1

Query: 97  SYQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAG 276
           SY LYR TT+G  L ++L+++   G +T +LA KVL QFDKS+N+ +S   K ++ F A 
Sbjct: 3   SYALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFCAT 62

Query: 277 KLNTYRFCDNVWTFMLNDVEFREVQEL--AKVEKVKIVACDGK 399
           +L TYR+CDNVWTF+LN+V  ++ Q      ++K+K+VACDG+
Sbjct: 63  QLLTYRYCDNVWTFILNNVTLKDPQRSFDEPIDKLKVVACDGR 105


>Z81124-4|CAB03372.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.6 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = +1

Query: 175 ITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGKLNTYRFCDNVWTFML-NDVEFREV- 348
           +T  +++ ++LQF+   +  L N+ +     K  +  TY F  N + FM+ + + F  + 
Sbjct: 117 LTGVISISIVLQFENRSSLILRNKFR----IKGTRYRTYWFLANFFAFMIFSVINFLNIP 172

Query: 349 -QELAKVEKVKIVACDGK 399
             + A+++ ++I+ C  K
Sbjct: 173 DPDQARIDILEILPCPTK 190


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 13  INLLLFRVLKHTKYFYFLFNCSVI*TVMSYQLYRNTTIGNTLQ 141
           +N LL  +     Y +  F+C +    + ++LY N  +GN +Q
Sbjct: 322 LNSLLLILCHRNSYVFVSFSCKIFCDFIFWKLYFNEQLGNLMQ 364


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 250 KSRLTFKAGKLNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 390
           K ++  + G+  TY +CDN + F  +   FR   ++A V  V   +C
Sbjct: 165 KLKMEQRFGQFETYMWCDNCFFFNFDSNLFRWFFDIAAVSVVLGASC 211


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 298  CDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDD 411
            CD+V T  L+D E+R  ++  +V+K     C   NV D
Sbjct: 917  CDDVDTNNLSDEEYRMYKKRCQVKKTPKDNCSNVNVKD 954


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,629
Number of Sequences: 27780
Number of extensions: 290519
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)