Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1629
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.6  

>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 298 CDNVWTFMLNDVEFREVQELAKVEKVKIVACDGKNVDD 411
           C N  T     ++ R+VQE+ K E       D + VDD
Sbjct: 13  CVNAMTIEELKIQLRDVQEICKAES----GIDQQTVDD 46


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 632 SHDVVKRRPVNCNTTHYRANWVPGPPF 552
           S +  K++P +C+T  YR   V  P F
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLF 586


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 90  CLNYTAVK*KIKVFRMF 40
           CL+YT  K K KV++ F
Sbjct: 141 CLHYTVDKSKPKVYQWF 157


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 90  CLNYTAVK*KIKVFRMF 40
           CL+YT  K K KV++ F
Sbjct: 146 CLHYTVDKSKPKVYQWF 162


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 330 IIQHKSPYIITKPVCVKFS 274
           I+Q  S Y  TKP+ +K+S
Sbjct: 566 ILQAPSLYDTTKPIDIKYS 584


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 90  CLNYTAVK*KIKVFRMF 40
           CL+YT  K K KV++ F
Sbjct: 146 CLHYTVDKSKPKVYQWF 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,836
Number of Sequences: 438
Number of extensions: 4180
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)