Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1627
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   3.0  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   3.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   5.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.2  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   9.0  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   9.0  

>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 590 KSPFKLLRPFSKYFPTVFLQNQCERYLRDFNKGLFEQ 700
           +SPF+L+R  +++FP++F  + C    + F  GL  Q
Sbjct: 5   RSPFRLIRSPARFFPSLF-HSSCN---QSFTNGLKHQ 37


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 24/83 (28%), Positives = 33/83 (39%)
 Frame = +2

Query: 98  FNSILNLNCNGRLKTFSDCLIHQPIGIRYRATILFNILYSGR*YRFRAAPEMSSIPVAAF 277
           + +I+ L C  R++ F +CLI Q         + F    SG    + AA    SI     
Sbjct: 398 WENIIVLGCGSRIRGFRECLIQQ---------LQFKYQLSGSLEPYYAAQGTDSI---LG 445

Query: 278 KMTRQCFEWPGFIISCNILPTVF 346
             T     +P  I  C ILP  F
Sbjct: 446 MTTMPPTPYPALINPCKILPDYF 468


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 92   RHFNSILNLNCNGRLKTFSDCLIHQPIGIRYRATILFNILYSGR*YRF 235
            R F+ + NL   G L  FS+C+    I +    T     L SG  YRF
Sbjct: 1497 RRFDKLHNL-LKGYLWLFSNCICRDNITLSRIGTNCMQQLLSGNAYRF 1543


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 555 PPVYRGEDYFDAGAKFHVPDNTPYA-RYFLSSFLQHQVYETLCKAAV 418
           P V   ++YF+ G +FH  D   Y  R   SS  ++ +Y   C ++V
Sbjct: 391 PDVETSKEYFELGYRFH--DGAVYVERGVCSSSWKYPLYPERCTSSV 435


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 555 PPVYRGEDYFDAGAKFH 505
           PP++ GE +FD+G  +H
Sbjct: 567 PPIHHGERHFDSGNDWH 583


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 633 GKYFENGLSNLNGDFWDMALELQGIVPPVYRGE 535
           GK    G+SN N ++ D  L++  + P +++ E
Sbjct: 158 GKVRYIGISNFNNEYLDRVLKIAKVKPTIHQME 190


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = -1

Query: 367 PLRHLRIEDRWQDITRNNETWPL-KTLACHLEGCDGDRRHLWSSSETILPAAVQDIKQDG 191
           P+ +   E  WQDI +  + W   K     LE  DG+ + L         A + ++    
Sbjct: 98  PIHNAVNERAWQDILQWEQGWGSEKCGGPKLERFDGNVKKLTPK------ARILNLLGYN 151

Query: 190 CPIPDSDWLVNQAIRK 143
            P    DWLVN+  RK
Sbjct: 152 KPFDRHDWLVNRCGRK 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,388
Number of Sequences: 5004
Number of extensions: 73954
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)