Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1627
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0592 - 25327128-25329566 30 1.8
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 30 2.3
08_02_0230 - 14572854-14574632 29 3.1
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 29 5.4
05_03_0158 - 9035916-9037143,9037735-9037853 29 5.4
04_03_0860 + 20377577-20377948,20378440-20378505,20379411-203794... 28 7.1
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 28 7.1
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 28 7.1
10_01_0196 + 2142132-2142416,2142882-2143574 28 9.4
>11_06_0592 - 25327128-25329566
Length = 812
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 364 LRHLRIEDRWQDITRNNETWPLKTLACHLEGCDGDRRHL 248
LRH+RI+D D+ R L+ L L+G G+ HL
Sbjct: 536 LRHVRIKDGQADLARIGSLEQLRKLGVVLDGSQGNITHL 574
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 663 RSHWFWRNTVGKYFENGLSNLNGDFWDMAL 574
R FW G+Y E G +N+ G W+ AL
Sbjct: 373 RDTHFWVYDDGRYEEEGQNNIKGKIWESAL 402
>08_02_0230 - 14572854-14574632
Length = 592
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 455 STKFMRRCAKRQSSVG-VMSTSPCLAPSEWTAATFTDRRPLAGY 327
+T +RRC R + V+ +P LA + TF+DR PL+G+
Sbjct: 212 TTLRLRRCTVRLCDLQKVILAAPRLAELRLESVTFSDRPPLSGF 255
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 292 LACHLEGCDGDRRHLWSSSETILPAAVQDIKQ 197
+ACH++ CDGD R +SS+ + + IKQ
Sbjct: 334 IACHVDDCDGDARLDQNSSDHKKFSIAERIKQ 365
>05_03_0158 - 9035916-9037143,9037735-9037853
Length = 448
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 549 LVERFLVIPRPCPKNLHSNCSDHSQ 623
LV LV P+PCP + CS H++
Sbjct: 98 LVPEHLVEPQPCPPGMMRACSSHAR 122
>04_03_0860 +
20377577-20377948,20378440-20378505,20379411-20379492,
20380142-20380362
Length = 246
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 543 YKLVERFLVIPRPCPKNLHSNCSDHSQNTFQRYSSKTNANAICGIL 680
Y L R +P+ + + C+ + + + SKT+A+++C +L
Sbjct: 169 YVLCARCSRLPQESQSGIETRCASRTMHGSKEAGSKTHAHSLCNLL 214
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 459 LQHQVYETLCKAAVFGRRNVDEPLPSTIR 373
LQ ++ + C+ A F R+ +D P+P T+R
Sbjct: 771 LQVKLLDPNCRIADFLRKTLDPPIPETVR 799
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 687 PLLKSRK*RSHWFWRNTVGKYFENGLSNLNGDFWDMALELQGIVP 553
P L+S++ H+F + TVG ++ ++ LN W + L + ++P
Sbjct: 1505 PDLRSKQLLVHFFLKRTVGNLSDDDVARLNS--WALGLRVLSLLP 1547
>10_01_0196 + 2142132-2142416,2142882-2143574
Length = 325
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -2
Query: 459 LQHQVYETLCKAAVFGRRNVDE-PLPSTIRMDRCDIYGSKTVG-RILQEIMKPGHSKHWR 286
L H+ Y L K FG N +E P +I + + G V + +I + H W
Sbjct: 144 LSHEEYSYLFKVLAFGSTNPEEHPQMVSIANELSVLLGGSFVAVNVFADIFRKNHVHLWL 203
Query: 285 VILK 274
+LK
Sbjct: 204 HVLK 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,909,914
Number of Sequences: 37544
Number of extensions: 488193
Number of successful extensions: 1300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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