Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1626
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285...    30   2.0  
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    28   6.2  

>01_06_0848 +
           32426550-32426613,32427013-32427167,32428470-32428526,
           32428877-32428930,32429349-32429418,32429951-32432034
          Length = 827

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -3

Query: 485 SSMCFSHKKKTIVLFPCKTLENLFLRSTLCIFYAHGTPDVTGPHIVISNVA**RFSLSRT 306
           SS+ FS +++ +     +     +L     +FY H +P++TG    ISNV   R   SR+
Sbjct: 316 SSLLFSQQQQRLAQVQVQPSHQNYLNLPPHLFYQHHSPELTGRFDSISNVPSLRDKRSRS 375


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 485 SSMCFSHKKKTIVLFPCKTLENLFLRSTLCIFYAHGTPDVTGPHIVISNVA**RFSLSRT 306
           SS+ FS +++ +     +     +L     IFY H +P++TG    +S+V   R   SR+
Sbjct: 314 SSLLFSQQQQRLAQVQVQPSHQNYLNLPPHIFYQHHSPELTGRFDSVSSVPSSRDKRSRS 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,443
Number of Sequences: 37544
Number of extensions: 323924
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)