Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1626
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical pr... 33 0.26
AF038619-1|AAB92076.2| 468|Caenorhabditis elegans Hypothetical ... 30 1.8
U88173-1|AAK21381.1| 264|Caenorhabditis elegans Temporarily ass... 28 5.6
Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical pr... 28 7.4
AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical... 28 7.4
Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z82267-2|CAB05190.1| 410|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical pr... 27 9.8
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 27 9.8
AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical... 27 9.8
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 27 9.8
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 27 9.8
>Z73899-6|CAA98078.1| 345|Caenorhabditis elegans Hypothetical
protein ZK829.8 protein.
Length = 345
Score = 32.7 bits (71), Expect = 0.26
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = +2
Query: 158 NLYTCLLKVRAN*KSYGFNNCSAIYVSAYELFSPVTHAQSIIYLRCTCP*SGLTRTAITP 337
NL T + + + GFNNC I+V LF AQ++I +RC T +
Sbjct: 52 NLITSVTEAVVSTAIEGFNNCLIIFVPHGLLFEYPLLAQNLISIRCGM--CAYTFALLAV 109
Query: 338 HLISQYAVR*HQVCREHKKCTGLNVKTNFLKS 433
H + +Y VCR KT FL S
Sbjct: 110 HFLYRYLA----VCRPLAIAHFFRPKTIFLNS 137
>AF038619-1|AAB92076.2| 468|Caenorhabditis elegans Hypothetical
protein F56A11.4 protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 500 TLIHYSSMCFSHKKKTIVLFPCKTLENLFLRSTLCI 393
T + Y + FS KTI +F C+++ N+FL +L +
Sbjct: 238 TYLIYGKLIFSESYKTIWMFWCRSIFNVFLPFSLLL 273
>U88173-1|AAK21381.1| 264|Caenorhabditis elegans Temporarily
assigned gene nameprotein 83 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 183 TFKRHVYKFDSCCTISLSIECSKLYRCNVIVVTILRP*NLYLKM 52
++KR++ F S + +S+ LY N I++T P N++LK+
Sbjct: 179 SYKRYLGYFSSLLSGRISVNSDPLYLHN-IILTFFEPINVFLKI 221
>Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical
protein F13G3.6 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 576 RLDVSCCFARLISFFFYCLD 635
R DVSC F + FF+ CLD
Sbjct: 189 RTDVSCGFPEDLEFFYKCLD 208
>AL110477-19|CAJ43447.1| 327|Caenorhabditis elegans Hypothetical
protein Y113G7B.5b protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -2
Query: 669 LNIRWALSSSTHLSNKKKKILNGQNSKIRLILNKNYFPFNACPTLLMQS*NEILQLNFNS 490
+ IR L S H KI+ G + + +N NY P++A + N +++ +S
Sbjct: 249 IKIRDDLMKSAHFEYAYIKIIEGVDPDVLRAINPNYHPYDALDP--FEHGNYTFRISSDS 306
Query: 489 LLEHVLQ 469
L + L+
Sbjct: 307 LFDSALK 313
>Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 435 QDFRKFVFTFNPVH 394
QDFR+FVF +P+H
Sbjct: 492 QDFRRFVFDMSPIH 505
>Z82267-2|CAB05190.1| 410|Caenorhabditis elegans Hypothetical
protein F38C2.4 protein.
Length = 410
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 11 VRTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLH 124
++T D N+ P +RYK LS V +TL + LL+
Sbjct: 93 IKTSPDGINKALPASMRYKLGSLSTVLLVTLICFTLLY 130
>Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical
protein F57C2.6 protein.
Length = 545
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 435 QDFRKFVFTFNPVH 394
QDFR+FVF +P+H
Sbjct: 492 QDFRRFVFDMSPIH 505
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 282 IILCACVTGLKSS*ADT*MALQLLNPYDF*LALTFKRHVYKFDSCCTISLSIEC-SKLYR 106
+ILC +T + + LQLL +DF + F++ + D C T ++C +L R
Sbjct: 403 LILCQPLTTEQQFSTNFKSQLQLLEMFDFYKKVLFQKMTCRIDGCDTYKQLMKCIHELNR 462
Query: 105 CN 100
N
Sbjct: 463 LN 464
>U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical
protein C44C1.4a protein.
Length = 547
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 447 FISLQDFRKFVFTFNPVHFLCSRHT*CYRTAYCDIKCGVIAVLVK 313
F+ RK +FT N H S T A IKCG+IA+L++
Sbjct: 127 FLDGVPIRKDLFTLNLTHIFDSSFT-LKEEAAERIKCGIIALLLQ 170
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 282 IILCACVTGLKSS*ADT*MALQLLNPYDF*LALTFKRHVYKFDSCCTISLSIEC-SKLYR 106
+ILC +T + + LQLL +DF + F++ + D C T ++C +L R
Sbjct: 403 LILCQPLTTEQQFSTNFKSQLQLLEMFDFYKKVLFQKMTCRIDGCDTYKQLMKCIHELNR 462
Query: 105 CN 100
N
Sbjct: 463 LN 464
>AL110477-18|CAB54327.1| 312|Caenorhabditis elegans Hypothetical
protein Y113G7B.5a protein.
Length = 312
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 669 LNIRWALSSSTHLSNKKKKILNGQNSKIRLILNKNYFPFNA 547
+ IR L S H KI+ G + + +N NY P++A
Sbjct: 249 IKIRDDLMKSAHFEYAYIKIIEGVDPDVLRAINPNYHPYDA 289
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 282 IILCACVTGLKSS*ADT*MALQLLNPYDF*LALTFKRHVYKFDSCCTISLSIEC-SKLYR 106
+ILC +T + + LQLL +DF + F++ + D C T ++C +L R
Sbjct: 400 LILCQPLTTEQQFSTNFKSQLQLLEMFDFYKKVLFQKMTCRIDGCDTYKQLMKCIHELNR 459
Query: 105 CN 100
N
Sbjct: 460 LN 461
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 282 IILCACVTGLKSS*ADT*MALQLLNPYDF*LALTFKRHVYKFDSCCTISLSIEC-SKLYR 106
+ILC +T + + LQLL +DF + F++ + D C T ++C +L R
Sbjct: 403 LILCQPLTTEQQFSTNFKSQLQLLEMFDFYKKVLFQKMTCRIDGCDTYKQLMKCIHELNR 462
Query: 105 CN 100
N
Sbjct: 463 LN 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,112,814
Number of Sequences: 27780
Number of extensions: 335500
Number of successful extensions: 725
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -