Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1625
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 47 2e-06
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 39 5e-04
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 35 0.006
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 1.2
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 26 2.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 3.6
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 26 3.6
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 8.4
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 8.4
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 130 TMESPRKFND--CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRH 300
T SP+ C F+ TCT G NC+F H+ +T+C +Q+G C +C L H
Sbjct: 29 TRPSPKSLQHVPCKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEH 88
Query: 301 M 303
+
Sbjct: 89 V 89
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 38.7 bits (86), Expect = 5e-04
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +1
Query: 115 RVAKNTMESPRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCK 291
R K SP Y+ C KG C F HEP+ +T+C + G+C + C
Sbjct: 195 RFLKEVGNSPSAVYCRYYNANGICGKGAACRFVHEPTR---KTICPKFLNGRCNKAEDCN 251
Query: 292 LRHMELRKNRKQIPCYWENQPGGCRKIHCPFMH 390
L H EL + ++IP G C +C ++H
Sbjct: 252 LSH-EL--DPRRIPACRYFLLGKCNNPNCRYVH 281
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 35.1 bits (77), Expect = 0.006
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +1
Query: 82 RLISVLKFARVRVAKNTMESP------RKFNDCYFYYYSTCTKGDNCVFRHEPSALGCET 243
RL+ K A+ + KNT E+ + C F+ TCT G+NC F H S
Sbjct: 15 RLLDQKKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPFSH--SLETERP 72
Query: 244 MCTAWQQGKCT-DKRCKLRH 300
+C + +G C +C L H
Sbjct: 73 ICKYFLKGNCKFGPKCALSH 92
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 301 CDVVYSVYQYISPVARLCTLFHSLRLTAHGETHNYLPLY 185
C VVYSV P+A LF L L + + LP++
Sbjct: 841 CQVVYSVISAFEPIA----LFQGLLLVGYSTMYTMLPVF 875
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 160 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRHMELRKNRKQIPC 336
C + C KG+ C F HE + ++G C++ + C H++ +++ C
Sbjct: 54 CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLD--PSKQVGVC 111
Query: 337 YWENQPGGC 363
W N G C
Sbjct: 112 AWYNM-GFC 119
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 361 CRKIHCPFMHKNP---EARTDGIAPSQPAPPVHACLNES 468
C + H+N DG++P+ P PP++ N S
Sbjct: 485 CNNLEAMLSHQNGFNYNINNDGLSPNAPHPPINEQSNSS 523
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 310 RKNRKQIPCYWENQPGGCRKIHCPFMHKNPEARTDGIAPSQPAPPVHACLNESVVEQSTD 489
R +R+ P +QP H D + S P PVH L++SV+ S D
Sbjct: 242 RSSRQTYPQQPNSQPCEQHPAHANLRRSVSLGSKDYLKSSHP--PVHKTLSQSVLVLSKD 299
Query: 490 GS 495
G+
Sbjct: 300 GN 301
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +2
Query: 284 AVNYVTWSLGKIVNKFHATGRTNLVAVARFTAHSCIRTPRHVLMELLQVSLPHLFMLA 457
A+ Y+ S+G + F ++ + +AR + +RT H+ EL ++ +F ++
Sbjct: 204 ALLYLILSIGSAASYFDLQSNSSTLPLARGFFNLALRTVPHIFTELSLDAIRIVFFMS 261
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 36 VFQKLLFSINYFHE--LKVN*CFKICSSPGSEKYHGVST 146
+F+K++F++ +FHE L++ F G YH V T
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCLLDSG--LYHQVFT 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,947
Number of Sequences: 5004
Number of extensions: 48776
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -