Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1625
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 38 0.003
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 38 0.003
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.005
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 33 0.12
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 33 0.12
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 33 0.12
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 33 0.12
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 31 0.61
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 30 1.1
U22833-3|AAA64323.2| 387|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 27 5.7
U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical pr... 27 5.7
L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical pr... 27 5.7
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 27 5.7
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 7.6
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 7.6
Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical pr... 24 8.4
Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical p... 24 8.4
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 318
PR DC ++ C+KG+ C F H+ + E +C GKC+ + C+ H R +
Sbjct: 2 PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 318
PR DC ++ C+KG+ C F H+ + E +C GKC+ + C+ H R +
Sbjct: 2 PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +1
Query: 160 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 339
C + C KGD C F HE + C+++ C RH++ K P Y
Sbjct: 82 CKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWY 141
Query: 340 WENQPGGCRK-IHCPFMHK 393
G CR +C H+
Sbjct: 142 ---DRGFCRHGPYCKHRHR 157
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 184 CTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRH-MELRKNRKQIPCYWENQPG 357
C G C RH +C W +G C +C+ H +L K + C++ ++
Sbjct: 63 CPFGPTCPLRHIDGEKA--VVCKHWLRGLCKKGDQCEFLHEYDLTKMPE---CFFFSKYS 117
Query: 358 GCRKIHCPFMHKNPEAR 408
C CPF H +PE +
Sbjct: 118 ACSNRECPFRHIDPETK 134
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 148 KFNDCYFYY-YSTCTKGDNCVFRH-EPSALGCETMCTAWQQGKCT-DKRCKLRH 300
K +C+F+ YS C+ + C FRH +P + C + +G C CK RH
Sbjct: 106 KMPECFFFSKYSACSNRE-CPFRHIDPETKMKD--CPWYDRGFCRHGPYCKHRH 156
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 273
CTKG+NC F +E A G T C A + KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 273
CTKG+NC F +E A G T C A + KC
Sbjct: 256 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 287
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 273
CTKG+NC F +E A G T C A + KC
Sbjct: 252 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 283
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 273
CTKG+NC F +E A G T C A + KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 30.7 bits (66), Expect = 0.61
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +1
Query: 160 CYFYYYSTCTKGDNCVFRHE-PSALGCETMCTAWQQGKC-TDKRCKLRHMELRKNRKQIP 333
C F+ C GDNC++ H+ +L +C + C +C + H E P
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLHGE-------FP 223
Query: 334 CYWENQPGGCRKIHCPFMH 390
C G C C F H
Sbjct: 224 CK-SFHKGQCNHDPCRFSH 241
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 29.9 bits (64), Expect = 1.1
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 172 YYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKNRKQIPCYWEN 348
++ CTKGD C F H P+ T C + CT RC H PC ++
Sbjct: 506 FWPKCTKGDTCAFMH-PT-----TNCKNFP--NCTFGIRCLFIHP---------PCRFDR 548
Query: 349 QPGGCRKIHCPFMHKNPEARTDG 417
C K HCPF H + G
Sbjct: 549 ---FCTKKHCPFTHHGTGGQQPG 568
>U22833-3|AAA64323.2| 387|Caenorhabditis elegans Hypothetical
protein W02B3.4 protein.
Length = 387
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +1
Query: 172 YYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCYWENQ 351
YY+ T+ D FR EP + + T W + KL +E K K + C +
Sbjct: 118 YYTNDTEKDFLDFRSEPRKIIPKKFSTCWVENLAVPADIKL-FVEFWKRAKFVNCMNLHI 176
Query: 352 PGGCRKIHCP 381
P K+ P
Sbjct: 177 PRAGSKVRMP 186
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 27.5 bits (58), Expect = 5.7
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Frame = +1
Query: 139 SPRKFNDC----YFYYYSTCTKGDNCVFRHEPSALG-CET--MCTAWQQGKCTDKRCKLR 297
+P+ F++C TC + +CV S G C + C +Q +C D L
Sbjct: 645 TPKSFDECTNTPLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQ-ECVDGPGMLT 703
Query: 298 HMELRKNRKQI----PCYWENQPGGCR-KIHC---PFMHKNPEARTDGIAPS 429
E R + PC EN G CR HC P +P + ++P+
Sbjct: 704 SWEKCPQRNSVATMRPCNMENNCGSCRISPHCTWYPIDKASPCVSKEDLSPA 755
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 27.5 bits (58), Expect = 5.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 160 CYFYYYSTCTKGDNCVFRHE 219
C F+ C +G+ C +RHE
Sbjct: 168 CSFFVKGECKRGEECPYRHE 187
>U28928-2|AAA68335.2| 329|Caenorhabditis elegans Hypothetical
protein C44B7.4 protein.
Length = 329
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 244 LFHSLRLTAHGETHN--YLPLYMWNSNK 167
LF LRL A +T Y PL +WN NK
Sbjct: 280 LFARLRLIAAEKTQQTMYTPLQLWNDNK 307
>L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical
protein C50C3.1 protein.
Length = 469
Score = 27.5 bits (58), Expect = 5.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 184 CTKGDNCVFRHE 219
CT+GDNC F+H+
Sbjct: 387 CTRGDNCRFKHD 398
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 27.5 bits (58), Expect = 5.7
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Frame = +1
Query: 139 SPRKFNDC----YFYYYSTCTKGDNCVFRHEPSALG-CET--MCTAWQQGKCTDKRCKLR 297
+P+ F++C TC + +CV S G C + C +Q +C D L
Sbjct: 645 TPKSFDECTNTPLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQ-ECVDGPGMLT 703
Query: 298 HMELRKNRKQI----PCYWENQPGGCR-KIHC---PFMHKNPEARTDGIAPS 429
E R + PC EN G CR HC P +P + ++P+
Sbjct: 704 SWEKCPQRNSVATMRPCNMENNCGSCRISPHCTWYPIDKASPCVSKEDLSPA 755
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 27.1 bits (57), Expect = 7.6
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Frame = +1
Query: 139 SPRKFNDC----YFYYYSTCTKGDNCVFRHEPSALG-CET--MCTAWQQGKCTDKRCKLR 297
+P+ F++C TC + +CV S G C + C +Q +C D L
Sbjct: 645 TPKSFDECTNTPLRLALKTCEEQTDCVSCASKSGCGWCSSGEQCLPNEQ-ECVDGPGMLT 703
Query: 298 HMELRKNRKQI----PCYWENQPGGCR-KIHC 378
E R + PC EN G CR HC
Sbjct: 704 SWEKCPQRNSVATMRPCNMENNCGSCRISPHC 735
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 396 PRGTY*WNCSKSACPTCSCLPKRECGGA 479
P G Y W CS+S CSC C GA
Sbjct: 1502 PNGFYGWYCSQS----CSCQNGAHCDGA 1525
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 396 PRGTY*WNCSKSACPTCSCLPKRECGGA 479
P G Y W CS+S CSC C GA
Sbjct: 1502 PNGFYGWYCSQS----CSCQNGAHCDGA 1525
>Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 24.2 bits (50), Expect(2) = 8.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 414 WNCSKSACPTCSC 452
W S+CPTC C
Sbjct: 362 WLAQDSSCPTCRC 374
Score = 21.0 bits (42), Expect(2) = 8.4
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +3
Query: 354 WWLSQDS 374
WWL+QDS
Sbjct: 361 WWLAQDS 367
>Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 24.2 bits (50), Expect(2) = 8.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 414 WNCSKSACPTCSC 452
W S+CPTC C
Sbjct: 362 WLAQDSSCPTCRC 374
Score = 21.0 bits (42), Expect(2) = 8.4
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +3
Query: 354 WWLSQDS 374
WWL+QDS
Sbjct: 361 WWLAQDS 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,068,391
Number of Sequences: 27780
Number of extensions: 290436
Number of successful extensions: 795
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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