Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1624
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543...    29   2.6  
04_03_0134 - 11677268-11677993                                         29   2.6  
04_03_0058 - 10427463-10428188                                         29   2.6  
03_05_0318 + 23062641-23063366                                         29   2.6  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     29   4.5  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   6.0  

>04_03_0535 -
           16850704-16853001,16854055-16854115,16854228-16854323,
           16854394-16854521,16855016-16855067,16855182-16855274,
           16855473-16855590,16856456-16856609,16857512-16857643,
           16859136-16859216,16859353-16859507,16860118-16860343,
           16860423-16860507,16860593-16860689,16861785-16861949,
           16862046-16862121,16863041-16863103,16863193-16863359,
           16863495-16863669,16863743-16863835,16864694-16864810,
           16865589-16865778,16866092-16866126
          Length = 1618

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 489 RKLAASTPSGWEQRKLPKALVLLLTTFISYHDYQS 385
           R L  +T +GW  R +  ALV+ LTT  +Y D +S
Sbjct: 741 RLLNPTTFAGWFGRSVYHALVVFLTTICAYSDEKS 775


>04_03_0134 - 11677268-11677993
          Length = 241

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 242 PKCFKLSFLISLNRYTVVLFLIIVNDTYPLLYYILEEPIST 120
           P C+   F  +  ++ + L L     TYP  Y+IL++PI T
Sbjct: 4   PYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGT 44


>04_03_0058 - 10427463-10428188
          Length = 241

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 242 PKCFKLSFLISLNRYTVVLFLIIVNDTYPLLYYILEEPIST 120
           P C+   F  +  ++ + L L     TYP  Y+IL++PI T
Sbjct: 4   PYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGT 44


>03_05_0318 + 23062641-23063366
          Length = 241

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 242 PKCFKLSFLISLNRYTVVLFLIIVNDTYPLLYYILEEPIST 120
           P C+   F  +  ++ + L L     TYP  Y+IL++PI T
Sbjct: 4   PYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGT 44


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 108 GSGLALPLKLLTSMGDGNHSPSGGPYARL 22
           GS LA  L+LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 120  SISVGSGLALPLKLLTSMGDGNHSPSGGPYARLRSRA 10
            S+S  +G  LPL +LTSM D N   S     RL S A
Sbjct: 1304 SLSTDAG-GLPLDVLTSMADSNGQISAAVMERLTSAA 1339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,934,447
Number of Sequences: 37544
Number of extensions: 358130
Number of successful extensions: 717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)