Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1624
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23454-4|AAC46517.1|  217|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U23454-4|AAC46517.1|  217|Caenorhabditis elegans Hypothetical
           protein C10A4.3 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 410 NVVNNNTSAFGSFRCSQPLGVDAASFLFPYSFIIYHFF--AHSP 535
           N+V +N S  G F  S  +GV    +L PY  ++Y+FF  AHSP
Sbjct: 84  NLVKDNQSGAGDFLIS--IGVFCKIYLIPY--MLYNFFSGAHSP 123


>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical protein
            K04D7.4 protein.
          Length = 1159

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 430  ERLWKLSLFPATWGRRSKFSLSILLYHIPFLRSLPSCNYTGTLEL 564
            E LW+L     TW ++ + ++ IL     F R LPSC Y G ++L
Sbjct: 978  EDLWRL-----TWQQKVQ-TIVILNQRDSFWRKLPSCIYDGEIQL 1016


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 489 RKLAASTPSGWEQRKLPKALVLLLTTFISYHDYQSYNSRIVFLKNG-ELFKS 337
           +K+A    + W +  L     L     +SY D+++ NS I+    G E+FKS
Sbjct: 78  KKVAYEIANAWSEAGLEDVHTLPYEVLLSYPDFENPNSVIIKSSAGKEVFKS 129


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 489 RKLAASTPSGWEQRKLPKALVLLLTTFISYHDYQSYNSRIVFLKNG-ELFKS 337
           +K+A    + W +  L     L     +SY D+++ NS I+    G E+FKS
Sbjct: 78  KKVAYEIANAWSEAGLEDVHTLPYEVLLSYPDFENPNSVIIKSSAGKEVFKS 129


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 489 RKLAASTPSGWEQRKLPKALVLLLTTFISYHDYQSYNSRIVFLKNG-ELFKS 337
           +K+A    + W +  L     L     +SY D+++ NS I+    G E+FKS
Sbjct: 97  KKVAYEIANAWSEAGLEDVHTLPYEVLLSYPDFENPNSVIIKSSAGKEVFKS 148


>Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical
           protein F28G4.1 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 483 LAASTPSGWEQRK---LPKALVLLLTTFISYHDYQS 385
           L  ST S W QR+    P     +L  F+S HDYQ+
Sbjct: 126 LLTSTGSKWRQRRKMLTPAFHFKVLNDFLSVHDYQA 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,401
Number of Sequences: 27780
Number of extensions: 315246
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)