Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1624
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.7  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 456 EQRKLPKALVLLLTTF--ISYHDYQSYNSRIVFLKNGELFKSSCILN 322
           E+ K PK +  L   +   +Y++Y +YN+      N +L+  + I+N
Sbjct: 307 ERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 529 VSEEMVYDKGVWKEKTCCVDPKWL 458
           V E +V DK  W E+   +  KW+
Sbjct: 65  VQENIVIDKRPWWERYQPISYKWI 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,407
Number of Sequences: 438
Number of extensions: 4485
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)