Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1621
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   3.6  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   8.4  

>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 IYIKESRVSYTIYNSGTAELI 318
           ++ +E R+SYT+Y +G   L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 442 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 320
           C   S+  C   F+  S  + +   S+ C SP   LPPH  S+
Sbjct: 19  CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 1   EKFVSHECEASVQFQR*PFKTARN*YIGHTVL*HYLYKLCNFSG 132
           + FV +  +A    QR  FKT  N  +  ++L  Y+Y   N+ G
Sbjct: 265 DSFVQNYGKALQHIQR-AFKTRNNDPVASSILERYVYSKKNYEG 307


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 446 VLLFHISCVLLYHVLCRVPRERYKKYPMSFSWFYATSSPIFSQISSAVPE 297
           +L FH +  LLY+  C +        P+S     A  +PI +++S+   E
Sbjct: 725 ILNFHDAIELLYNFSCSLSNRIRINVPISTDALAAQYTPIKNELSNFTEE 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,511
Number of Sequences: 5004
Number of extensions: 47249
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)