Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1619
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1522 + 27651983-27652690                                         30   1.4  
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159...    30   1.9  
02_05_0930 - 32801737-32801936,32802038-32802107                       29   3.3  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    29   4.3  
02_01_0189 - 1273313-1274157,1274595-1275549                           29   4.3  
08_02_1271 - 25762750-25764276                                         28   5.7  
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669...    28   7.6  

>08_02_1522 + 27651983-27652690
          Length = 235

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 160 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 339
           A ++S  +T++ I  G L    D YCS E   C P N VC+        G    EC   L
Sbjct: 27  ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83

Query: 340 LDL 348
           LD+
Sbjct: 84  LDM 86


>08_01_0191 +
           1590948-1591607,1591694-1592176,1592449-1592451,
           1592555-1592992
          Length = 527

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 66  IIPQCLCLFLRKCTRCFREERDVGIRVCPDARWRRLRSNHPGR 194
           +IP CLC+ L +      ++++ G R   D   RR+R+  P R
Sbjct: 6   LIPLCLCILLLRGASAVSDQQEAGRRDSCDRIDRRIRALEPTR 48


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 247 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 330
           T +   C  V N+ +   DSGLCV  CQ
Sbjct: 27  TAQLETCTEVINREYPTCDSGLCVANCQ 54


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 640 RGSGVSYFELEFGVSVSALRHEGCDASSH*GTASRGSWLA-GTFALNISKRLFLCI 476
           RG G  +FE  FG          C      G A+RGSW A   +   +++R   C+
Sbjct: 181 RGGGSGFFEAGFGPPTPGSGRSSCS-----GVAARGSWPAWACWRREVARRRAACL 231


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 148 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 273
           VL +AG     +  DG    G  +C  D +CSPE    C P  V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 148 VLMLAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 264
           VL +AG     +  +G    G  +C  DE+CSPE    C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487


>02_05_0561 -
           29965968-29966326,29966375-29966414,29966877-29966951,
           29967003-29967107,29967453-29967592,29967691-29967775
          Length = 267

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 208 QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 330
           +  C  +EY + E+N CA         +  Y  GL   EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,250,078
Number of Sequences: 37544
Number of extensions: 402390
Number of successful extensions: 1324
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)