Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1617
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0483 + 22618990-22619017,22619344-22619834                       28   6.7  
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14...    28   8.8  
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824...    28   8.8  

>01_05_0483 + 22618990-22619017,22619344-22619834
          Length = 172

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -2

Query: 510 LNIFVTSTTTRTGTLYHRFFFLPILVTSTGYFRFTELVGELTG---LKPGVLP 361
           + + V S  T   + YH  FF     T   +F  T     +TG   LKP ++P
Sbjct: 18  ITVTVHSALTSANSFYHAIFFSDQEYTIQKHFSLTSCAVSVTGDRYLKPWIIP 70


>07_01_0022 -
           146406-146498,146616-146693,146967-147020,147729-147792,
           147900-148018,148207-148278,148544-148596,148746-148836,
           148956-149099
          Length = 255

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 539 FLRAARVVGILIYSSPVPPRGLGHCIIDFFFYL 441
           FL    VV I  + S V    L H I+DFF+Y+
Sbjct: 193 FLIRCIVVAISAFDSDVSLEVLDHPILDFFYYM 225


>06_03_1025 -
           26980631-26981286,26981434-26981557,26982290-26982426,
           26983220-26983355,26983615-26983922,26985159-26985207
          Length = 469

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 356 SDGNTPGLSPVSSPTSSVNLK*PVD 430
           SDG  PGL  +SSP+   ++K P D
Sbjct: 439 SDGQQPGLEALSSPSRDGSIKDPPD 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,125,389
Number of Sequences: 37544
Number of extensions: 402232
Number of successful extensions: 960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)