Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1610
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.29 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   1.5  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   3.5  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   4.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   8.2  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.2  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   8.2  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +1

Query: 100 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 252
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 476 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 342
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 219 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 386
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 387 VWLQS*NLKELTEXHHQXW 443
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 145 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 252
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 PSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGXA 430
           P++NR   +  S +VT  +++     PKIL    + + + K K I G A
Sbjct: 749 PTANRIACLTESGEVTVYSKKGPVWSPKILSQNKNYLTETK-KDIYGIA 796


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 288 VLTVNMSSSDPPTLLQWLGGQLPGNQRF 371
           V+++  ++   P +LQW GG+  G+  F
Sbjct: 706 VISIAKANPTFPIVLQWTGGRAGGHHSF 733


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 108 NKIEPRSYSIIPCTKYSSSIFSP 40
           N ++P+S +++P T +  SI SP
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSP 51


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 473 PVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 333
           PV S    Q+     P +    V + Q Y P SP   V   +PA P+
Sbjct: 374 PVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 324 TLLQWLGGQLPGNQRFWTPGGVWLQS*NL 410
           TLLQ LG  +P        G VW+ S NL
Sbjct: 180 TLLQTLGSYIPFEIAVGMNGRVWVNSENL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,669
Number of Sequences: 5004
Number of extensions: 36814
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)