Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1608
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   2.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.8  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   6.3  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   6.3  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   8.4  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 161 VCDLGSST*VHESRSSLVYRVRHVIIKSVLIVYEGFVL 48
           VC     T +     S +Y++R V+I S+LI+  G  L
Sbjct: 262 VCSTDDLTAISSFILSSIYKIRKVVIISLLIIIAGLFL 299


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 189 IIHCGTNA-ARVRPWIINIGSRVEVLFSISRASCYNQK--RANCL 64
           +  CG+ A A  +PWI+N   +  +LF +     + +K  RA CL
Sbjct: 640 VFRCGSIAYAAQQPWILNATIQENILFGLELDPEFYEKTIRACCL 684


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 518 TRDIQDGDTYQYGPPKRPTTSKGRLAMPIPYVPFTTTTTKNXWSYSRARPHTANSLVIKK 697
           T +I+D D     P +RP   K    +P P  P    T+ +  SY   RP    ++ ++ 
Sbjct: 303 TLNIKDSDELLINPKRRPIEVKPAAPVPTPAPP--VKTSPHPASY---RPQPTRNVEVRP 357

Query: 698 SIMV 709
            +M+
Sbjct: 358 LLML 361


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 VETLRRTRKLYQRILKKKLDFTLCIENY 285
           V T+  TRKLY R+ + K+     + NY
Sbjct: 493 VGTIETTRKLYDRVFELKIATPQVVVNY 520


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 574 GRAFWGPILVGITILYISG*KSGT*YISLYRKP 476
           G+A+W  +LVG+    +SG KS    I+  R P
Sbjct: 74  GKAYWLAMLVGLLECLLSGGKSFAKVINCLRFP 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,363
Number of Sequences: 5004
Number of extensions: 59690
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)