Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1608
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z49070-1|CAA88869.1|  384|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X76116-1|CAA53722.1|  384|Caenorhabditis elegans carrier protein...    28   5.9  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z46935-1|CAA87049.2|  519|Caenorhabditis elegans Hypothetical
           protein M106.2 protein.
          Length = 519

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 590 LAMPIPYVPFTTTTTKNXWSYSRARPHTANSLVIKKSI 703
           L++P+P  P +TTT  N   Y +A  H + SL +  ++
Sbjct: 136 LSIPVPITPVSTTTADNILDYIKA-THVSPSLSVDAAL 172


>Z49070-1|CAA88869.1|  384|Caenorhabditis elegans Hypothetical
           protein T09F3.2 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 2   KTRIK-HTDVIGLWQRLKQIPHRQ 70
           KTR++ H   IG+WQ +K++ HR+
Sbjct: 229 KTRLQLHQGHIGIWQMIKRVYHRE 252


>X76116-1|CAA53722.1|  384|Caenorhabditis elegans carrier protein
           (c2) protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 2   KTRIK-HTDVIGLWQRLKQIPHRQ 70
           KTR++ H   IG+WQ +K++ HR+
Sbjct: 229 KTRLQLHQGHIGIWQMIKRVYHRE 252


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 527  IQDGDTYQYGPPKRPTTSKGRLAMPIPYVPFTTTTTKNXWSYSRA 661
            +Q+G++     P RP TS  R    +  VP T +T ++ + ++ A
Sbjct: 966  LQNGNSIPQNAPNRPQTSCIRSKTVVNTVPLTISTDRSGFHFNMA 1010


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 527  IQDGDTYQYGPPKRPTTSKGRLAMPIPYVPFTTTTTKNXWSYSRA 661
            +Q+G++     P RP TS  R    +  VP T +T ++ + ++ A
Sbjct: 966  LQNGNSIPQNAPNRPQTSCIRSKTVVNTVPLTISTDRSGFHFNMA 1010


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,506
Number of Sequences: 27780
Number of extensions: 326884
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)