Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1605
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical...    29   3.2  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    28   5.7  
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.3 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 360 VYYNLPRATPILQLLEATIFVCKGNIEILYVYLNTY 253
           + Y  P+ T +  L + +IF+    +E+ Y+YL T+
Sbjct: 133 IKYTFPKTTKLTNLQKVSIFIFFTIMEVYYIYLCTW 168


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 309 TIFVCKGNIEILYVYLNTY 253
           T+F+CK    +L+VY NTY
Sbjct: 242 TVFICKSIAIVLFVYNNTY 260


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -3

Query: 511 KKASCV*FYPTRFYKYVWIFLKCFICVFCLLQIMAARRLLILEWNHRNY 365
           KK  C      + Y+++ +F+    C+F    ++ +  L ++   HR++
Sbjct: 500 KKGYCDASCQKQIYQFIIMFIALSFCIFITAPVLQSSSLRVVNHKHRDH 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,403,909
Number of Sequences: 27780
Number of extensions: 308274
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)