Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1603
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.68 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   1.6  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    26   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   6.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.3  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   6.3  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   8.4  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 24/94 (25%), Positives = 43/94 (45%)
 Frame = +3

Query: 270  TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 449
            T  +  TP+ +ST+  +SIP+ S  +  S+  I   +     + I  SS +  +T I S 
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323

Query: 450  PLGATTYTTPFVQTVPIASTASLPVAAHLIKKRS 551
             +  T  +TP   +  + S  S P+ +  +   S
Sbjct: 1324 TVVNT--STPITSSSVLNS--STPITSSTVVNSS 1353


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 397 ATSLLAPT-SLPTPTSQVALLEPLPTRHPS 483
           ATS L PT S P  TS  +L   LPT +PS
Sbjct: 306 ATSTLQPTTSSPITTSAPSLSSALPTTYPS 335



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query: 315 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT------PNTYIASGPLGATTYTT 476
           VSS+PL S   +  +H      P  P SY++ ++  +       + +  S P    +Y+T
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519

Query: 477 PFVQTVPIASTASL 518
               T PI  + SL
Sbjct: 520 SSNFTTPITISTSL 533


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 612 VFSHQS-SYNLHGAPLVTSYTTPLVYSAPISTHVGLSGN 725
           + +H S SYNL    + T+  TPL  ++P +  V  S N
Sbjct: 373 ILNHYSKSYNLQNPSVSTAAGTPLYLASPPALQVATSKN 411


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 411 SSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 524
           S+  T +T I +G  G+++ +TP   TVP  ST+S  +
Sbjct: 226 STSCTTSTSIPTG--GSSSLSTPITPTVPPTSTSSTSI 261



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 288 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLG-AT 464
           T    +T   +S P+I++  + ++      S   P+    PS+  +  T  +  P G ++
Sbjct: 73  TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL----PSTSTSCTTSTSIPPTGGSS 128

Query: 465 TYTTPFVQTVPIASTASLPV 524
           + +TP   TVP  ST+S  +
Sbjct: 129 SLSTPITPTVPPTSTSSTSI 148


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 423 TPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHLI 539
           TP   +++      T  TPF    PI S++S P A H +
Sbjct: 170 TPFRSVSTTSSSNDTSITPFGDQTPILSSSSDPYATHRV 208


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 327 PLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIAS 506
           P+  QPIA +      ++   P+   A  +  TPNT  +   L A        Q VP+ S
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTS 291

Query: 507 TASLPV 524
           + ++ V
Sbjct: 292 SPAMAV 297


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 261
           S I  PW T+    + ISS  GL+   L ++L+ H   ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 632 LQFARRSSCYILHDTSGVLCSYFNSRRFK 718
           L FA   S Y +     +LC Y NS +FK
Sbjct: 167 LSFAHGISPYNMDSQDFILCEYNNSTQFK 195


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 433 PTSQVALLEPLPTRHP-SCRP 492
           PTS +ALLE  P  HP SC P
Sbjct: 171 PTSLIALLELPPVIHPLSCVP 191


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 393 VSYIAPSSYITP-NTYIASGPLGATTY 470
           V Y++P+   TP + +I   PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,483
Number of Sequences: 5004
Number of extensions: 51090
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)