Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1602
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.38 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.38 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 558 KSRRSARSLCQRRKDWVVWRSWCGQNCIDYGTDQQCLPKPM 680
           +S+RS+ S   R  +      +CG+    +G+  + LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 558 KSRRSARSLCQRRKDWVVWRSWCGQNCIDYGTDQQCLPKPM 680
           +S+RS+ S   R  +      +CG+    +G+  + LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 129
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 22  FLKMLGAISRVGSGILAVKSVAEKSLSEC 108
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 129
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 RSPRLVLEVAQHLGENTVRTIAMDGTE 348
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 337 DGTEGLVRGQPVLDSGSPI 393
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,229
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)