Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1601
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.24
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 28 0.95
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 0.95
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 27 1.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 1.7
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.2
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.9
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 2.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 3.8
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 5.1
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 5.1
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 8.9
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.24
Identities = 27/136 (19%), Positives = 57/136 (41%)
Frame = +3
Query: 180 SNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKVTETSNGSNIYIINDD 359
S+SNNS + +NT + N +N + V S + S+ + + + N +N N++
Sbjct: 515 SSSNNSNSSNNNSNTSNNNSNTSNNESMV--SKLSSLSGMASSFLGSSGNNNN----NNN 568
Query: 360 RHVVSVSQNGVTTQNAKNPKETSFDVCVENKKQMFQEQEPIKVQENKFNKNSINDTGMNN 539
+ + + N N ++ + +S ++ F + +N N+ + G NN
Sbjct: 569 SNSGNYNNNNSGNNNQQHQQSSS---SLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNN 625
Query: 540 NRKLSLQIGGATNNNS 587
N+ + + NS
Sbjct: 626 NQNYNNNNNSSQGGNS 641
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/89 (20%), Positives = 38/89 (42%)
Frame = +3
Query: 141 SKIENPSTTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKVTE 320
S + +++ L SS +NN+ + N + N G N + +S ++ + + +
Sbjct: 547 SSLSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSG 606
Query: 321 TSNGSNIYIINDDRHVVSVSQNGVTTQNA 407
SN N N+ + + +QN N+
Sbjct: 607 NSNKQNYNNNNNQNYGNNNNQNYNNNNNS 635
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 486 VQENKFNKNSINDTGMNNNRKLSLQIGGATNNNSFVYKNQLNN 614
V+ ++N N N +NN K+ +Q+ NN +YKN L +
Sbjct: 46 VKAEQWN-NEANKWVTSNNIKIRVQVDETFANNHLIYKNDLRS 87
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 159 STTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRS 287
S + SSNS+ + TL + T++ G GT + +SP S
Sbjct: 470 SVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATATSSSPYYS 512
Score = 27.1 bits (57), Expect = 2.2
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 141 SKIENPSTTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRS----VITFENG 308
S I + ST + SS+S +S T +TN + T V +SP S + T
Sbjct: 248 SIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPS 307
Query: 309 KVTETSNGSNIYIINDDRHVVSVSQNGVTTQNA 407
V+ ++ S+ Y SV+ G T +A
Sbjct: 308 SVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSA 340
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Frame = +3
Query: 144 KIENPSTTMLASSNSNNSITL-KVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKVTE 320
K +P + LAS ++ KV + Q G K + + + FENGK +
Sbjct: 35 KAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKA------MPTFVFFENGKQID 88
Query: 321 TSNGSNIYIINDDRHVVS--VSQNGVTTQNAKNPKE--TSFDVCVENKKQMFQEQEPIKV 488
G+N + + ++S + G ++ P + S C+EN + Q+
Sbjct: 89 MLTGANPQALKEKVALISSKATGTGALASSSSAPVKGFASLQGCIENPQLECLNQQDDHD 148
Query: 489 QENKFNKN 512
++ FN N
Sbjct: 149 LKSAFNSN 156
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 72 VAYQKTVRIPQKKPLLRYSKAIGSKIENPSTTMLASSNSNNSITLKVTTNT 224
+ + + ++ L R+++A+ NP +LA++ +I L V TNT
Sbjct: 49 ITSESSTKVEYLSTLSRHTQAVNVVRFNPEGNILATAGDEGTIMLWVPTNT 99
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +3
Query: 309 KVTETSNGSNIYIINDDRHVVSVSQNGVTTQNAKNPKE------TSFDVCVEN-KKQMFQ 467
K +E + I++ +DD Q + Q KNP+E +SF C+ KK++F+
Sbjct: 132 KDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKLAPPSSFAKCLTGAKKRVFE 191
Query: 468 EQEPIKVQENK---FNKNSIND 524
+Q I + ++ FN S +D
Sbjct: 192 DQIEIHLSKSSLLGFNAPSPDD 213
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 72 VAYQKTVRIPQKKPLLRYSKAIGSKI--ENPSTTMLASSNSNNSITLKVTTNTMSQNGGG 245
+ Y K V + + P Y KA+ S I E+PS +++ ++VT S
Sbjct: 52 LGYVKQV-LDETLPKKGYEKALHSFIIHEDPSLNYISALKETAKERIRVTVPVYSSR--- 107
Query: 246 TNTKVYVQNSPVRSVITFENGKVT 317
K YVQ P+ ENG T
Sbjct: 108 ---KSYVQTKPITHSAENENGNET 128
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 324 SNGSNIYIINDDRHVVSVSQNGVTTQNAKNPKETSFDVCVE------NKKQMFQEQEPIK 485
SN + + +D+R + SVS + +++ KNP+ + ++ M + P++
Sbjct: 315 SNTDSFGLESDERSLPSVSNDLKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVE 374
Query: 486 VQENKFNKNSINDTGMNNN 542
V F++ +++ NN+
Sbjct: 375 VPAPTFDRRNVSRNSNNNS 393
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +3
Query: 159 STTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKVTETSNGSN 338
++T + SSN S + VT+ ++ T+T V ++PV S T TS
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYT 564
Query: 339 IYIINDDRHVVS----VSQNGVTTQN 404
+ + +S V+ VTT N
Sbjct: 565 STPVTSSNYTISSSTPVTSTPVTTTN 590
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 186 SNNSITLKVTTNTMSQNGGGTNTKVYV 266
SNNSITL+ ++ N G N V+V
Sbjct: 251 SNNSITLRQLLPCVNGNEGSANNSVFV 277
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 5.1
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 297 FENGKVTETSNGSNIYIIND-DRH--VVSVSQNGVTTQNAKNPKETSFDVCVENKKQMFQ 467
F + V E NI + D + H ++S + T++AK+ ++ D+ + K F+
Sbjct: 73 FTDFAVFEVDTDGNIVHLTDMEAHDPILSKATGDKETEDAKD--SSNQDISNDQKAPSFK 130
Query: 468 EQEPIKVQENKFNKNSINDTGMNN 539
EQEP + + SI G+ N
Sbjct: 131 EQEPATLPILPNDLQSIIPKGIGN 154
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 408 KNPKETSFDVCVENKKQMFQEQEPIKVQENKFNKNSI 518
K PKET +C EN+ ++Q +K E K+ I
Sbjct: 484 KAPKETPERLCTENQSTENEDQANLKESELPKEKSDI 520
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = +3
Query: 396 TQNAKNPKETSFDVCVENKKQMFQEQEPIKVQENKFNKNSINDTGMNNNRKLSLQIGGAT 575
T N+ P S V +EN QEP N N++S T N + S G +
Sbjct: 402 TSNSDMPTANSMPVKLENGTDYSTSQEP---SSNANNQSS--PTSSINGKASSESANGTS 456
Query: 576 NNNSFVYKNQLNNTNE 623
+ +N N T+E
Sbjct: 457 YSKGSSRRNSKNETDE 472
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 5.1
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 99 PQKKPLLRYSKAIGSKIENPSTTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSP 278
P +PL R+S A PS L SS+ ++S+ V+ + N +NT Y ++S
Sbjct: 188 PSSQPLDRFSPA-----SFPSKETLTSSSLSSSVPRSVSLS----NFADSNTSNYPESSL 238
Query: 279 VRSVITFENGKVTETSNGSNIY 344
+ + NG V GS Y
Sbjct: 239 LPAAKVGNNGFVGSNVLGSMSY 260
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 489 QENKFNKNSINDTGMNNNRKLSLQIGGATNNNSFVYKNQLN 611
Q + FN S N+ NNN++ + I GA ++F +QLN
Sbjct: 183 QNSPFNSFSNNNNSFNNNQQAN-DIFGAPTTSAFT--SQLN 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,245
Number of Sequences: 5004
Number of extensions: 53755
Number of successful extensions: 193
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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