Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1601
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    31   0.007
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    29   0.049
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.085
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
 Frame = +3

Query: 363 HVVSVSQNGVTTQNAKNPKETSFDVCVEN-KKQMFQEQEPIKVQENKFNKNSINDTGMNN 539
           H  +        QNA N    + +   +N  KQ    Q   +  +NK N N  ND   N 
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG 482

Query: 540 NRKLSLQIGGATNNNSFVYKNQLNNTNE 623
           NR+   +  G   N +    N+ N   +
Sbjct: 483 NRQNDNKQNGNRQNGNKQNDNKQNGNRQ 510



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 447 NKKQMFQEQEPIKVQENKFNKNSINDTGMNNNRKLSLQIGGATNNNSFVYKNQLNNTNE 623
           + KQ    Q   K   N+ N N  ND   N NR+   +  G   N++   +N  NN N+
Sbjct: 477 DNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQND-NNRND 534



 Score = 27.1 bits (57), Expect = 0.15
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 447 NKKQMFQEQEPIKVQENKFNKNSINDTGMNNNRKLSLQIGGATNNNSFVYKNQLNNTNE 623
           + KQ    Q   K  +NK N N  ND   N NR+   Q     NN +    NQ++++++
Sbjct: 487 DNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRN---DNQVHHSSK 542



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 246 TNTKVYVQNSPVRSVITFENGKVTETSNGSNIYIINDDRHVVSVSQNGVTTQN 404
           TNT VY+ +     +I ++N   +     SN +  +     ++V+    T +N
Sbjct: 202 TNTMVYIADEKGEGLIMYQNSDDSFHRLTSNTFDYDPRYTKLTVAGESFTVKN 254


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 489 QENKFNKNSINDTGMN--NNRKLSLQIGGATNNNSFVYKNQLNNTN 620
           +  K NK  ++D+ MN  NN +    +   +N+N F+    +N  N
Sbjct: 431 EPKKDNKRKLSDSTMNKINNHEYKRSVSRESNSNQFILMTTVNEGN 476


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 0.085
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 159 STTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKV 314
           ST  LA +   N + L  ++N  + +G G        +SP    I+ ++G +
Sbjct: 517 STCSLAVAKQQNQVPLTSSSNVNNNSGNGNTNSSARDSSPAIESISVDSGSI 568



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
 Frame = +3

Query: 156  PSTTMLASSNSNNSITL----------KVTTNTMSQNGGGTNTK-VYVQNSPVRSVIT-- 296
            P T++ ASS S NSIT+          ++TTNT ++       K V V  S  +S++   
Sbjct: 855  PITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQSN 914

Query: 297  ---FENGKVTETSNGSNIYIINDDRHVVSVSQNGVTTQNAKNPKE--TSFDVCVENKKQM 461
               F + ++ + S  + +  I    H V  S   V   +A N     T+    +   K  
Sbjct: 915  QQHFPHHQI-QVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973

Query: 462  FQEQEPIKVQENKFNKNSINDTG 530
             Q+Q     Q+ +      N  G
Sbjct: 974  SQQQSQQSQQQQQQQTIVTNQAG 996


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 411 NPKETSFDVCVENKKQMFQEQEPIKVQENKF--NKNSINDTGMNNNRK 548
           N  + +F +   N K++ +    +   +N    N N+ ND    NN+K
Sbjct: 392 NFDDVNFRILGANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKK 439


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 447 NKKQMFQEQEPIKVQENKFNKNSINDTGMNNNRKLSLQIGGATNN--NSFVYKNQLN 611
           +K++     E  + +E K   +  N+T  NNN K +       NN  N  +Y N +N
Sbjct: 62  SKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 447 NKKQMFQEQEPIKVQENKFNKNSINDTGMNNNRKLSLQIGGATNN--NSFVYKNQLN 611
           +K++     E  + +E K   +  N+T  NNN K +       NN  N  +Y N +N
Sbjct: 62  SKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 573 TNNNSFVYKNQLNNTNE 623
           +NN+ ++Y+N ++N N+
Sbjct: 373 SNNDVYLYQNTMSNNNQ 389


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 573 TNNNSFVYKNQLNNTNE 623
           +NN+ ++Y+N ++N N+
Sbjct: 411 SNNDVYLYQNTMSNNNQ 427


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 495 NKFNKNSINDTGMNNNRKLSLQIGGATNNNS 587
           N  N N+ N+ G N+N   +    GA+NNN+
Sbjct: 242 NNNNNNNNNNNGANDNGNGN----GASNNNN 268



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 174 ASSNSNNSITLKVTTNTMSQNGGG 245
           AS+N+NN+       N  + NG G
Sbjct: 237 ASNNNNNNNNNNNNNNGANDNGNG 260


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +3

Query: 141 SKIENPSTTMLASSNSNNSITLKVTTNTMSQNGGGTNTKVYVQNSPVRSVITFENGKVTE 320
           SK+ + S   L  S   N I+ +V        G     K  V  +P   ++   NG   E
Sbjct: 301 SKLYSVSVVSLDKSLEVNHISARV--------GDNVEIKCDVTGTPPPPLVWRRNGADLE 352

Query: 321 TSNGSNIYIIND 356
           T N   I + ND
Sbjct: 353 TLNEPEIRVFND 364


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 495 NKFNKNSINDTGMNNN 542
           N +N N+ N+   NNN
Sbjct: 94  NNYNNNNYNNYNYNNN 109


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 233 LGHSVCGNF 207
           LGH VCG F
Sbjct: 121 LGHEVCGRF 129


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 500 FIFLYFNRFLFLKHLLFVFDTDVE 429
           FIFLYFN  +  +      D  +E
Sbjct: 22  FIFLYFNSLVRFRRFTIELDKVLE 45


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 570 HRLFAEKAYDYYSYPCRLW 514
           HRL+A+     Y YP   W
Sbjct: 118 HRLYAQIKTGSYDYPSPEW 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,962
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)