Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1599
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    75   4e-15
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    75   7e-15
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    60   2e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    38   0.001
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.013
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.4  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          27   1.9  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   5.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   5.8  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   5.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   7.7  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    25   7.7  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 35/81 (43%), Positives = 53/81 (65%)
 Frame = +3

Query: 87  VVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFING 266
           VVVF+KSYCPYC   + V    K   +V +++  ++G+ IQ  L + TG RTVP +FI+ 
Sbjct: 17  VVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQ 76

Query: 267 NCVGGGSDVKALYESGKLEPM 329
             VGG SD +AL++ G+L+ +
Sbjct: 77  KHVGGNSDFQALFKKGELDSL 97


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 35/82 (42%), Positives = 48/82 (58%)
 Frame = +3

Query: 87  VVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFING 266
           V VFSKS+CP+CK AK+   K   P K  EL++ ++G+ IQ  L + T   TVP +F   
Sbjct: 18  VTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRN 77

Query: 267 NCVGGGSDVKALYESGKLEPML 332
             +GG SD+  L  SG L  M+
Sbjct: 78  QFIGGNSDLNKLRSSGTLTKMI 99


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
 Frame = +3

Query: 87  VVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVF 257
           V++FS+  CPY   AK +     ++  P  V+E+ + +    ++D L+ ++   T+P +F
Sbjct: 68  VIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIF 127

Query: 258 INGNCVGGGSDVKALYESGKLEPML 332
           + G+ +GG   V+ALY+  KL+  L
Sbjct: 128 VGGHSIGGSDSVRALYQEEKLQSTL 152


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 13/43 (30%), Positives = 30/43 (69%)
 Frame = +3

Query: 204 IQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 332
           +++ + + + + T+PQ++ING  VGG   + ++++SG+L  +L
Sbjct: 82  LREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.013
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 198 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 332
           ++++  L   + + T PQ++I G  VGG   V  + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/59 (23%), Positives = 33/59 (55%)
 Frame = +3

Query: 45   TFNSLSRKLSPKYKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLA 221
            TF+S++R       ++++ KS C Y K+ + + E +   +  ++L +++    IQ+ +A
Sbjct: 3293 TFDSVNRASKACGPLLLWIKSICNYSKVLEKL-EPLNSEVDRLKLEQKNAEECIQETIA 3350


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +1

Query: 103 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHN*LVSELYLK 252
           N T+ ++S  K F R+  N + +  LS  N  +ETPF  + H+ +VSE +++
Sbjct: 36  NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 LAKDVFEKVKQPIK-VIELNERDDGNTIQDNLAQLTGFRTV 245
           L K V +    PI+  +  N+   G+TI   LA +TG RT+
Sbjct: 381 LLKKVAQLADVPIQSFVVRNDSPCGSTIGPKLAAMTGMRTL 421


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +1

Query: 43  RHSTVYQGSYLQSTKL*CSPNLTVLTVSWQKMFLRK*SNQLKLLS 177
           RHS+V Q SY    +  C P +  +  ++  +F +    ++ +++
Sbjct: 183 RHSSVIQKSYGSEKRYLCPPPMVYINGNYSSIFNQSFRTEISIMN 227


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 234 NQSVVRDYLEWCFHH 190
           + +V+R  LEWC HH
Sbjct: 47  SSNVLRKVLEWCEHH 61


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 199  FPSSRSFNSITLIGCFT 149
            FP  +SF S+   GCFT
Sbjct: 964  FPIMKSFTSLLAYGCFT 980


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 87  VVVFSKSYCPYCKLAKDVFEKVKQ------PIKVIELNERDDGNTIQDNLAQLTGFRTVP 248
           +VVF   +C YCK     ++K+        P+  ++ +   D N    +  Q+ GF T+ 
Sbjct: 52  LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDA--DQNRAVCSQYQVQGFPTIK 109

Query: 249 QVF 257
            V+
Sbjct: 110 LVY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,776
Number of Sequences: 5004
Number of extensions: 34005
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)