Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1599
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.71 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.94 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   8.8  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 340 YPINIGSNFPDSYNALTSEP 281
           YPI  G +FP  Y   T+ P
Sbjct: 384 YPIGSGGSFPSLYPMATTSP 403


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 319 NFPDSYNALTSEPPPTQLPFIKT 251
           N  D+Y ++ S P  T LPF+ T
Sbjct: 917 NMLDTYESVHSFPTETGLPFVYT 939


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 81  YKVVVFSKSYCPYCKLAKDVFEKVKQ 158
           YKV     +YC  C L +D +   +Q
Sbjct: 533 YKVETIGDAYCVACGLHRDTYIHAQQ 558


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 FSRFIQCFNIRATSHTVAIYKDLRYSSETSQL 222
           F   IQ +N+   SHTV  +  L+   E S L
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHL 95


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 468 SSAHRYMNTDSPKLT*NVNNILYVHQNINLNMQIII 361
           S+ + Y N ++     N NN   ++ NIN   QI I
Sbjct: 86  SNNYNYSNYNNYNNNNNYNNYKKLYYNINYIEQIPI 121


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 285 SDVKALYESGKLEPM 329
           SD+K++YES   E M
Sbjct: 35  SDLKSMYESNSEEQM 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,530
Number of Sequences: 438
Number of extensions: 2377
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)