Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1598
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 37 0.001
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 35 0.006
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 1.5
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 25 4.6
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 25 4.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.0
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 8.0
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.0
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.0
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 37.1 bits (82), Expect = 0.001
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 150 VTGSVNFTLDRPITVQALLVEATGEAVVEWIEKETETYNGVKQYKQ--VRYYGNEAYLRH 323
++GSV L+ I+V+A+ ++ G+ + W E G + KQ V Y N ++ +
Sbjct: 39 LSGSVVLCLNEAISVKAISLKLVGKCRISWSEPSPTVRGGQRHNKQEYVVYEKNWIFVPY 98
Query: 324 TQHLVANNGQIQLSAGSQSLPFRFQIPHTVPSTVAG 431
T AN L AG+ PF +P + +V G
Sbjct: 99 TG---ANR---TLRAGNYEYPFHVMLPGDIAESVEG 128
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 35.1 bits (77), Expect = 0.006
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 252 TETYNGVKQYKQVRYYGNEAYLRHTQHLVANNGQIQLSAGSQSLPFRFQIPHTVPSTVAG 431
T ++ G+K++ R E + H + NN +++ + +P P T+
Sbjct: 46 TASFTGLKKFPTERQLPLECHFNHIDWDLGNNFKVKEGV-FYTFDIIAPLPRCTPRTIVT 104
Query: 432 ERGNINYKITARL 470
+ G+I+YK+T +L
Sbjct: 105 QEGSISYKLTVKL 117
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 408 TVPSTVAGERGNINYK 455
T PST ERGN+NY+
Sbjct: 493 TAPSTTIDERGNLNYE 508
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 300 GNEAYLRHTQHLVA----NNGQIQLSA-GSQSLPFRFQIPHTVPSTV 425
G + +LR Q+ + NG+ +SA G +LP+ F P T P +
Sbjct: 140 GTKGFLRGAQYAICLALIENGKPVVSAIGCPNLPYDFNQPETSPKGI 186
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 372 NRLKAEFVHCLRLDVECASNT 310
N LK F H L D+E A NT
Sbjct: 136 NMLKLNFYHSLGFDLETAENT 156
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 256 SVSFSIHSTTASPVASTSKA*TVIGRSN 173
SV+ S STT AST A T+I RS+
Sbjct: 322 SVALSTSSTTTITNASTPAANTIISRSS 349
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = -1
Query: 308 LVAIVSNLFVLFNTIICFSFFFDPLYNSFTSCLNKQSLNRNW 183
++ ++ L ++F I CF+FF Y + +++ + R W
Sbjct: 726 VIELICTLLLIFVVIYCFTFFAPMTYGDKSLSVDEWT-RRKW 766
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 85 WFRKRHHKVGLNKQMCF 135
WFR+RHH K C+
Sbjct: 42 WFRRRHHCRWCGKLFCY 58
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 482 ISLNKASSNLVIDIASFTCHC 420
I +K +S LV +IAS C C
Sbjct: 193 IEADKEASTLVTEIASLACSC 213
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 8.0
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -1
Query: 290 NLFVLFNTIICFSFFFDPLYNSFTSCLNKQSLNRNWSI-*RKIYTSRYNLTRIKHICLLS 114
N F LF +I+C ++ L N + L QSL + +S ++ S N T CLL
Sbjct: 264 NFFPLFLSILCVGYYHHLLNNPSNTEL--QSLIKKYSFYSERLVKSADNFTIESIQCLLI 321
Query: 113 PTLWCLFRNHIPLFYF 66
+++ R I ++
Sbjct: 322 LSIYRYCRTEISAAWY 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,729
Number of Sequences: 5004
Number of extensions: 38851
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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