Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1598
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854...    29   2.6  
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551           27   8.0  

>10_08_0001 +
           13984436-13984514,13984804-13984926,13985181-13985468,
           13985560-13985690,13985764-13985979,13986059-13986442
          Length = 406

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 311 RLVAIVSNLFVLFNTIICFSFFFDPLYNSFTSCLNKQSLNRNWSI*RKIYTSRY 150
           R   +++NLF +     CF  +  P +  F   +  +       + R +YTS Y
Sbjct: 260 RWTIVMANLFAVIQITGCFQIYCRPTFAQFEQRIQAKDAGYRARMWRLVYTSAY 313


>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
          Length = 589

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 237 WIEKETETYNGVKQYKQVRYYGNEAYLRHTQHLVANNGQIQLSAGSQSLPFRFQIPHTV 413
           W++    + NG      VR + N   +   Q  V  +GQ Q+ A       R   PH+V
Sbjct: 524 WVQGYKASPNGTDLMAMVRPFWNIEIIAPNQDEVCPDGQAQILAYYSLAGMRSDYPHSV 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,852
Number of Sequences: 37544
Number of extensions: 209045
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)