Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1589
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   0.76 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.3  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    26   3.1  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   4.1  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.1  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   9.4  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 248 TSAMPRAEPSLCLPFNTLHKPRLKKDMS*RLGNTVEGSSFHSRMIRG 108
           TS++P    S     NTL  P L  + S    +TV  + FH+  I G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 50  IHITWSHCCHPQCVSRCLFCHV----SSGYGMSSPPRCF 154
           I+  W+HC     +  C++  +    S G+G SS   C+
Sbjct: 732 IYTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMECY 770


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 280 T*W*VVTVAHGLQQCQGQSQASAYRLILST 191
           T W +V++ HGLQ C   +  +A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 71  CCHPQCVSRCLFCHVSSGYGMSSPP 145
           CCH  C+    FC +   Y M   P
Sbjct: 381 CCHMNCLCGTHFCFLCGAYLMEQNP 405


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 47  FIHITWSHCCHPQCVSRCLFCHVSS 121
           F  IT +HC  P+ V+RC+  + SS
Sbjct: 236 FKRIT-THCSSPRFVNRCIILYFSS 259


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 54  ILPGATAVIHSAFPDVFFATYH 119
           IL  + +VI  A  DVF+AT H
Sbjct: 611 ILSSSISVIECAVNDVFYATVH 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,107
Number of Sequences: 5004
Number of extensions: 48368
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)