Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1589
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0053 + 365188-365376,365451-365729,365818-367341                 30   1.3  
12_02_0402 - 18625023-18625808                                         27   7.2  
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    27   7.2  
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502...    27   7.2  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   7.2  
08_01_0951 - 9436319-9436372,9436536-9436622,9436700-9436728,943...    27   9.5  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    27   9.5  

>08_01_0053 + 365188-365376,365451-365729,365818-367341
          Length = 663

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +2

Query: 230 PLALLKSMGDGNHSPSGGPYARLPTRAIKKIKKCTRAE*T 349
           PL  L  + DGN + SG P A +PT  ++ IKKC   E T
Sbjct: 342 PLWKLLRLSDGNSAVSGSPLA-VPT--VEMIKKCEEEEVT 378


>12_02_0402 - 18625023-18625808
          Length = 261

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 80  PQCVSRCLFCHVSSGYG 130
           P+C +RC+F HV  G G
Sbjct: 87  PRCTTRCIFQHVDGGGG 103


>11_01_0533 +
           4214900-4215162,4215986-4219043,4219613-4221539,
           4221561-4222094,4222388-4222842,4223073-4223189,
           4223319-4223477
          Length = 2170

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 53  HITWSHCCHPQCVSRCL 103
           HI W+ CCH   +S C+
Sbjct: 600 HILWNLCCHSDDISACV 616


>09_04_0479 -
           17948043-17949037,17949554-17949715,17949809-17950262,
           17952895-17953326
          Length = 680

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 265 PLTIRWAVCSSTYKGNKKNKKMYTCRMN 348
           P+   WA+ S T   +++NK  Y C  N
Sbjct: 235 PVVYDWAITSKTCTESRRNKTSYACISN 262


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 212 GRGLALPLALLKSMGDGNHSPSGGPYARLPTRAIKKIKKCTRAE 343
           G  LA  L LL  M      PSG  YARL  RA+ +  +   AE
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL-IRALARAGRTLEAE 106


>08_01_0951 -
           9436319-9436372,9436536-9436622,9436700-9436728,
           9437447-9438044
          Length = 255

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 116 SSGYGMSSPPRCFPSA--MTCPSSNEACGEY*TVGRGLALPLALLKSMGDGNHSPSGGPY 289
           SS   +S P +C  +   +   +  +A  EY  +G+  AL    L+    G     GG Y
Sbjct: 120 SSRTSLSPPQKCTAALRMLAYGTPADALDEYLKIGKSTALEC--LEMFSQGVIEVFGGTY 177

Query: 290 ARLPTR 307
            R PTR
Sbjct: 178 LRRPTR 183


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 NELPSTVFPKRYDMSFFKRGLWRVLNG 210
           N+   T +  RY+M+F K G W++  G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,136
Number of Sequences: 37544
Number of extensions: 367879
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)