Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1589
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    28   3.7  
Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 19/63 (30%), Positives = 25/63 (39%)
 Frame = +2

Query: 5   HLVFTIAPPATGVEFIHITWSHCCHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSN 184
           H +  +  PA   +       HC   QCV+R  + H S  Y     P C P  M  PS +
Sbjct: 264 HPLVLVVHPAPQAQCSPACQPHCSQ-QCVARLQYMHESQFYNHILEPSCRPDCM--PSCH 320

Query: 185 EAC 193
             C
Sbjct: 321 VDC 323


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 56  ITWSHCCHPQCVSRCLFCH 112
           + WS C HP CV+  +F H
Sbjct: 10  VNWSRCVHPSCVAWVIFIH 28


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +2

Query: 74  CHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEACGEY*TV-GRGLALPLALLKS 250
           C P C   C+  H         P +C P  + C S N  C +Y  +  +   L  +   S
Sbjct: 393 CMPLCQPTCVQQHAEVVVACGVPCQCQPGYVQC-SQNLCCLKYKNMAAKFRKLSGSTTNS 451

Query: 251 MGDGNHSPSGGP 286
             +GN+  + GP
Sbjct: 452 NNNGNNGHNNGP 463


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 71  CCHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNE 187
           CC P+   +C+  +V        P RCFP   +CP S +
Sbjct: 427 CCKPR--KKCVIPYVDPD--KKRPIRCFPGDQSCPISTD 461


>Z92831-3|CAC70085.1|  276|Caenorhabditis elegans Hypothetical
           protein F22G12.6 protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -3

Query: 263 YRRPWTSAMPRAEPS--LCLPFNTLHKPRLKKDMS*RLGNTVEGSSFHSRMIRGKKDIWK 90
           Y    +S+ P + PS  L L  + L KPR         GN+++    H  ++  + D WK
Sbjct: 33  YELECSSSTPDSFPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK 92


>Z81577-3|CAB04649.1|  528|Caenorhabditis elegans Hypothetical
           protein R11.3 protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 239 MPRAEPSLCLPFNTLHKPRLKKDMS*RLGN 150
           +PR +P++  P NTL     KK++S  LGN
Sbjct: 245 LPRLDPTMFSPVNTLSPSIFKKEIS-HLGN 273


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 74  CHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEAC 193
           C  QC  +C    +SSG   SS      SA T P+    C
Sbjct: 73  CSNQCNQQCTSITISSGPSCSSCQSACSSACTTPTCIRTC 112


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 74  CHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEAC 193
           C PQC+  CL  H+     ++  P+C P     P+    C
Sbjct: 406 CQPQCLQSCLEQHIQPQV-VTQLPQCIPQCQ--PACEPQC 442


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 83  QCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEACGEY 202
           QC  RC  C   +     +PPR  P+     S NE C  Y
Sbjct: 118 QCPKRCGVCTSGASNSTLAPPRPSPTPPCFDSGNE-CATY 156


>AC024812-4|AAF59550.1|  197|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.6 protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  FYHRTARHRSRVHPYYLEPLLSSTVRFQM 99
           F+H +  H   +HP Y  P L+ T++ ++
Sbjct: 25  FFHLSLDHEVCLHPKYFGPNLNETIKMKL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,646
Number of Sequences: 27780
Number of extensions: 283134
Number of successful extensions: 756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)