Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1588
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.21 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    29   0.49 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    29   0.65 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.0  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   6.1  
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...    25   8.0  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 220  DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE-MFDKVDKFLQSHTLRVKVPEEITK 396
            ++ I I++D+S+ +T  V+D+  A+  + +D   E   D ++K        VK  E +T 
Sbjct: 884  EENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTT 943

Query: 397  SAASEYVP 420
               +  +P
Sbjct: 944  LEETIEIP 951


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 232 KITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLRVKVPEEITKSAASE 411
           K+ E +   K   VE +      L++ P   M +KV K       + KV E     A +E
Sbjct: 94  KVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKVSK-------KPKVSE-----AHNE 141

Query: 412 YVPRSLLTDLPSELDMPLDGEDE 480
            +    +  + +ELD+P+ G+DE
Sbjct: 142 EISPENVETIENELDLPVKGKDE 164


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +1

Query: 310  DPAYEMFDKVDKFLQSHTL----RVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGED 477
            D +Y  FD +    ++H +     V V   IT +   EY+ +   T L  ++ +  DG+D
Sbjct: 1018 DCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKD 1077

Query: 478  EAEVVE 495
              E+ E
Sbjct: 1078 REEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 190  TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFLQSHTLR 369
            TL   SS AND+  ++T  +++  T T + D+SA   +       + D  D  L+ +  R
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA---IVSKLNQILSDFRDDLLEHNVRR 1288

Query: 370  VK-VPEEITKSAASEY 414
            V  V   I KSA   Y
Sbjct: 1289 VTIVGGRINKSAYPSY 1304


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 98  KATIDNNTIIAGH 60
           K T+DNNT++ GH
Sbjct: 338 KKTVDNNTVLLGH 350


>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 390 YLLWNFHPKSMTLEKLVHFVEHFVGRI 310
           +L+ N+H + M   KLV F+  F+  +
Sbjct: 116 FLITNYHTEEMLKHKLVDFIIEFMEEV 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,008
Number of Sequences: 5004
Number of extensions: 45270
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)