Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1588
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    31   0.59 
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z75550-6|CAA99930.1|  591|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical p...    29   2.4  
AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate o...    29   2.4  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    29   3.2  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   3.2  
Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical ...    27   7.3  
AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5 prot...    27   7.3  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   7.3  
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        27   9.6  
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    27   9.6  

>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 349 LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 498
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 81  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 131


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 349 LQSHTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPL--DGEDEAEVVEG 498
           L   T+RV++ +E   +    YVP   L  LP EL+     +G+ EA+++ G
Sbjct: 95  LADSTVRVQI-DEPESAIRKRYVPNPALVSLPEELEFSSVENGDQEAKIIGG 145


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +1

Query: 100 ASATYPASKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVED 279
           AS  YP +   +NI+N    Q  +    P  + W ++    D     + L+ +K GT++ 
Sbjct: 318 ASFKYPIN-YYRNIFNAKKQQADLVLEMPTLIIWGTADGALDIEAAVDSLNTLKQGTMKK 376

Query: 280 DESADPRLAKDPAYEMFDKVDKFLQSH 360
            E A   + +D    + + + KFL  +
Sbjct: 377 IEGASHWVQQDEPEMVNEHIKKFLNKY 403


>AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical
           protein Y6B3B.9 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 564 FLDEPVFALDPQWFRELDLLLPALNDFSLIF 472
           F D  VF+ D +W++ LD LLP   +FS  F
Sbjct: 329 FADADVFS-DEEWYKVLDHLLPVAKNFSTEF 358


>Z75550-6|CAA99930.1|  591|Caenorhabditis elegans Hypothetical
           protein T22C1.8 protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 GTVEDDESADPRLAKDPAYEMFDKVDK 345
           G  +DD+ A  RLAK P+ E  D+ DK
Sbjct: 9   GNSQDDQQASRRLAKKPSDEKVDEKDK 35


>U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical
           protein F18E3.7a protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 366 KSMTLEKLVHFVEHFVGRILGQSRVGRFIILNCSGLHDRKIFSD 235
           K++ LE+ + F +  V  +   +  G  +I+NC+GL+  K+  D
Sbjct: 151 KNLLLEQKIEFKQQEVTSLDAVADAGYDVIVNCAGLYGGKLAGD 194


>AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 366 KSMTLEKLVHFVEHFVGRILGQSRVGRFIILNCSGLHDRKIFSD 235
           K++ LE+ + F +  V  +   +  G  +I+NC+GL+  K+  D
Sbjct: 151 KNLLLEQKIEFKQQEVTSLDAVADAGYDVIVNCAGLYGGKLAGD 194


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 501 EEEDQAP*TIEDQEQTRVHQER 566
           EEED+AP T +++EQ R  +ER
Sbjct: 141 EEEDEAPTTDDEEEQKRKEKER 162


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 501 EEEDQAP*TIEDQEQTRVHQER 566
           EEED+AP T +++EQ R  +ER
Sbjct: 141 EEEDEAPTTDDEEEQKRKEKER 162


>Z68004-7|CAA91988.2|  237|Caenorhabditis elegans Hypothetical
           protein F47B10.8 protein.
          Length = 237

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 130 LVSMPDTWHLRRQRSITTLLLLAIFTVAHCS 38
           L S PD +H R + S+TT +L+ +  +A  S
Sbjct: 170 LRSNPDEYHFRSRESVTTAILVTLGVMAAMS 200


>AL590342-2|CAC35859.3|  685|Caenorhabditis elegans Hypothetical
           protein Y66A7A.5 protein.
          Length = 685

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 259 KTGTVEDDESADPRLAKDPAYEM 327
           K+  +EDD+   PRLAK P  EM
Sbjct: 647 KSPKLEDDDDPPPRLAKMPRLEM 669


>AL032622-4|CAA21499.1|  738|Caenorhabditis elegans Y66A7A.5
           protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 259 KTGTVEDDESADPRLAKDPAYEM 327
           K+  +EDD+   PRLAK P  EM
Sbjct: 700 KSPKLEDDDDPPPRLAKMPRLEM 722


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 148 ECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVK 261
           EC     + CVKPRTL+ +    N DE +  E   IV+
Sbjct: 301 ECQMAEMLSCVKPRTLEKIVLQKNYDENQTIELKEIVQ 338


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/98 (18%), Positives = 41/98 (41%)
 Frame = +1

Query: 10  SVASAVKQNRNSEQQ*KWPAIIVLLSIVAFASATYPASKLVKNIYNECLSQYSVECVKPR 189
           S+   + QNR S        +  + S++   +   PA+ L   +Y E   +Y     +  
Sbjct: 86  SICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIV 145

Query: 190 TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 303
              W++   N+ +  + +D+ I +      +++ D R+
Sbjct: 146 EQSWLNFGENEGDAVLKDDVEIEEIAAPGANDADDDRM 183


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/98 (18%), Positives = 41/98 (41%)
 Frame = +1

Query: 10  SVASAVKQNRNSEQQ*KWPAIIVLLSIVAFASATYPASKLVKNIYNECLSQYSVECVKPR 189
           S+   + QNR S        +  + S++   +   PA+ L   +Y E   +Y     +  
Sbjct: 86  SICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIV 145

Query: 190 TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 303
              W++   N+ +  + +D+ I +      +++ D R+
Sbjct: 146 EQSWLNFGENEGDAVLKDDVEIEEIAAPGANDADDDRM 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,857
Number of Sequences: 27780
Number of extensions: 259430
Number of successful extensions: 827
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)