Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1587
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    28   4.7  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    28   6.2  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   6.2  

>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/53 (24%), Positives = 30/53 (56%)
 Frame = +1

Query: 364 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGPILYNYPFCL 522
           + + VPC ILKF++   I++   + +   Y+  + +F   + G +++ + FC+
Sbjct: 432 ICVAVPCRILKFWAFLGIMLQIPLIVLTAYL--KSKFRDTMVGNMIFWFFFCI 482


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 364 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGP 495
           +++++ C ++K  S+   +  H +F F+ YM   ++++RN   P
Sbjct: 585 IMMHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARP 628


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 71  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 169
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,741
Number of Sequences: 37544
Number of extensions: 209098
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)