Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1586
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   1.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.4  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   7.7  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   7.7  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   7.7  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 299 DPFSNINNHLSLGSFLFSCDFN 364
           +PFS++   L+ GSF FS DF+
Sbjct: 139 EPFSSLRKLLTNGSFYFSLDFD 160


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 503 PKVRKGIPNSVIDEVLRVKRSYYKT 429
           P + KG PN + D +  +K+ YY T
Sbjct: 80  PPIPKGAPNFLADVLNLLKKKYYAT 104


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 465 INNTIWNALSDLGT*CSSIPI 527
           + N IW+ L+   T C S+PI
Sbjct: 74  LRNIIWDVLAGCSTACLSVPI 94


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 408 DYGEPILSFIIASFYSQNLINNTIWNALSDLGT*CSSIPI 527
           +YG+ +       F  ++L NN +  A   LG  CS IP+
Sbjct: 157 EYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPV 196


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 357 SQLNRNDPRLR*LFILEKGSMLTSGYELKILMIS 256
           + +NR DP  R    LE G +L  G  +  L +S
Sbjct: 465 ANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVS 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,592
Number of Sequences: 5004
Number of extensions: 40136
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)