Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1585
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   6.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.9  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   6.9  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   6.9  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   9.1  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    24   9.1  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 196 ADISVLYRNTEILGRLSSYEVPSLVFQNG 110
           AD+ +L +  E+  RLS  E+P+ V  NG
Sbjct: 195 ADLRLLQKAKELGKRLSGKELPTRVGDNG 223


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 227  TIETRIVINIQIVSYLHIKSRLNILLHSNA 316
            +I  +I++NI   S+L+I   L ILL ++A
Sbjct: 1440 SINPKILLNIYEKSWLNIAESLTILLSTDA 1469


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 133 PSLVFQNGR*SLMAAYTVPGNKCCTSRHLQKERVV 29
           PS++F +   SL++A +  GN+  TSR ++ E ++
Sbjct: 552 PSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLI 586


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +1

Query: 280 KESFKYFITFKCYTITGRKMFYIIKRALV 366
           KE    FIT K Y+ T RK F   KRALV
Sbjct: 227 KEYCTLFITSKAYSSTCRKEF---KRALV 252


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 205  LIKMLKFNYRDAYSDKYSNRFVFAYKESF--KYFITFKCYTITGRKMFYIIKRALV 366
            L+++ +   R+ +SD+Y  + +          + IT +C+ +   K FY I+  L+
Sbjct: 1179 LVRICEEASRNEHSDQYLRKLLLKLITDLYINHDITKECFLLWDMKQFYEIRSTLL 1234


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 183 FCIGTRKFSDVCRVTRSHHWYFKMADEV 100
           F +  R++ D    T+   WY K+ DE+
Sbjct: 493 FALPRREWGDDIPTTKEAFWYRKLFDEI 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,158
Number of Sequences: 5004
Number of extensions: 38501
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)