Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1585
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1233 + 25057139-25057262,25058340-25058911                       27   5.1  
01_05_0227 - 19512866-19514983                                         27   5.1  
01_01_0655 - 5001495-5002392,5002493-5002653,5002779-5003184,500...    27   6.8  
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307...    27   9.0  

>07_03_1233 + 25057139-25057262,25058340-25058911
          Length = 231

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +1

Query: 16  GAKIRRLSLSVGVAMCNIYCRVLYTPPLNFIGHFEIPMMGPRNSTDV-REFPCSDTKQKY 192
           G +       +  A  + +   + TPP NF GH     +  R  T     +PC+  +  +
Sbjct: 92  GYRCDHCDFDIHEACADFFPEKMITPPPNFFGHPWSHNLALRQVTAADGSWPCTLCRGPF 151

Query: 193 QHNNL 207
           QH +L
Sbjct: 152 QHGHL 156


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 21  QNKTTLSFCRCRDVQHLLPGTVYAAIK 101
           +N   LSF  C D+Q LLP   Y  ++
Sbjct: 514 ENLRVLSFVYCTDLQQLLPSEPYGKLR 540


>01_01_0655 -
           5001495-5002392,5002493-5002653,5002779-5003184,
           5003523-5003572,5004710-5004727
          Length = 510

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 157 GRLSSYEVPSLVFQNGR*SLMAAYTVPGNKCCTSRHLQKER 35
           G+L  Y   S++  +     +A+YT    K CT+R +Q ER
Sbjct: 4   GQLLYYATLSVLLTSSFTESVASYTAIAYKFCTARLIQSER 44


>11_06_0176 +
           20929629-20929791,20929918-20930333,20930449-20930736,
           20931034-20931147,20931245-20931352,20931701-20931744,
           20933106-20933200,20934103-20934182,20934278-20934391,
           20934476-20934628,20934740-20934832
          Length = 555

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 139 RNSTDVREFPCSDT-----KQKYQHNNLIKMLKFNYRDAYSDKYSNRFVFAYK 282
           ++ TD   F  +D      +++ + N++IK +K   R+  SD+ SN F  A K
Sbjct: 281 KSLTDAHHFEVADAAELQREKRKEGNDIIKAVKKKLRNLPSDRSSNEFHVACK 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,007
Number of Sequences: 37544
Number of extensions: 207034
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)