Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1583
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    29   0.49 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.0  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 230 FHHECVKNDYEDILYKRE-TSQ*KQAINELIKGFNNTTHTY--IKCE*YFH 87
           F  +CV+   +++LYKRE      +   E++  FN+TT  +  I C  +FH
Sbjct: 624 FFIKCVEQIPDELLYKREFHKDFSKLYKEILDIFNSTTVNFLMILCSRFFH 674


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 230  FHHECVKNDYEDILYKRETSQ*KQAINELIKGFNNTTHTYIKC 102
            F   C   + E   YK   S     I++L  GF+ TT T+++C
Sbjct: 1511 FPELCKDINPEQRTYKCNLSISLSQIDDLCNGFSFTTSTFLQC 1553


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 191 LYKRETSQ*KQAINELIKGFNNTTHTYIKC 102
           L++    + K+ +N+L+  FN+T   +I+C
Sbjct: 622 LFRTVAQRHKEQLNQLMNQFNSTQPHFIRC 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,002
Number of Sequences: 5004
Number of extensions: 59497
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)