Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1583
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    28   5.7  
AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 631 PQSTPHGTYGTKYRGNRSPSVDPEAPKV 548
           P+S   GT+  K RG  +P V PEAP++
Sbjct: 294 PKSRGEGTFTAKNRGKVAPKV-PEAPEI 320


>AF000193-1|AAB52891.1|  715|Caenorhabditis elegans Hypothetical
           protein T20B6.2 protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 250 LSIKVS*KLV*DIYTFNLNNLVYILSKFFYCLDGWTSSWPTWC*VVTGVHR 402
           L+ K++  L+ D Y   +N  +Y   KF+ CL   T+ WP     V+ VH+
Sbjct: 218 LAGKINFSLIDDYYK-EINEPLY--KKFYVCLGNITNKWPIVQKAVSVVHQ 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,416
Number of Sequences: 27780
Number of extensions: 328416
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)