Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1582
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 4.1
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 26 5.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 7.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 7.1
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 25 9.4
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 60 PRGADDRAAFVSLLKELRLAFEGE 131
PRG DDR AF LLKE+ LA + E
Sbjct: 16 PRGLDDRQAFGQLLKEV-LALDKE 38
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.3
Identities = 30/123 (24%), Positives = 47/123 (38%)
Frame = -3
Query: 760 SGNLPVPQKPRKSSMSTDQTMIPPNPFSFSQAIFVLSDLSSSNPTHWSPR*ANGTICSLS 581
+GN P P ST T PP P S +SS T SP + T C+ S
Sbjct: 348 TGNSTTPVTPTVPPTSTSSTSTPPPPAS-----------TSSTGTSSSPLLSTSTSCTTS 396
Query: 580 QTSVVLSSRRNSQIS**DMKPASLVKRPASPPSEAGAPMSYCVSLISVKDLPYVGMPIIS 401
TS+ + + ++ P PP+ + P++ + + +PY P+ S
Sbjct: 397 -TSIPPTGNSTTPVT------------PTVPPTSSSTPLT-TTNCTTSTSVPYTSTPVTS 442
Query: 400 FSL 392
L
Sbjct: 443 TPL 445
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 471 RRCRTVFR**A*RTFRTWACRSSASLWGHPG 379
RRC T R R+ R +C S LWGH G
Sbjct: 36 RRCSTCKRINK-RSIRCLSCHSVGCLWGHHG 65
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 444 INETQYDIGAPASEGGEAGRFTNEAGFMSYYEICEFLREDN 566
+NE Y + E A + N G +S ++C FL E+N
Sbjct: 92 MNEFYYQVAVRVIEVCYATQMEN-GGLLSVSQVCRFLNEEN 131
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 219 PVHHIRQRSPRTTPVQQQ*AGAGADLKSWLHPRTPDAI 106
P + ++ +P+Q AG +LK LHP+TPD I
Sbjct: 380 PAKELSPQATLNSPIQSAEAG-NVELK--LHPQTPDRI 414
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -3
Query: 724 SSMSTDQTMIPPNPFSFSQAIFVLSDLSSSNPTHWSPR*ANGTICSLSQTSV--VLSSRR 551
SS+S+ + + S S +I S SSS+PT S ++ + S S TS +SS
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSS 311
Query: 550 NSQIS 536
+S S
Sbjct: 312 SSSSS 316
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 300 CCARPGAPTGRGSHKSSRL*SPNISIFPVHHIRQRS 193
CC P +G G H SS L + F +H + Q S
Sbjct: 809 CCYEPSFISGLGMHNSSILQKSIVERFWLHGVSQIS 844
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 636 DDERSLKTKMAWLKEKGFGGIMVWSVDMD 722
DD + L W+KEKG + S+D D
Sbjct: 1057 DDTQQLAAVKHWIKEKGINSLTRVSLDED 1085
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 724 SSMSTDQTMIPPNP 683
SS TDQT+ PPNP
Sbjct: 267 SSTPTDQTLRPPNP 280
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 727 KSSMSTDQTMIPPNPFSFSQAIFVLSDLSSSNPTH 623
K ST+Q I NP ++ A+ L+ L + T+
Sbjct: 146 KEEWSTEQYEIAENPSGYASALHTLTQLDDGSETN 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,208
Number of Sequences: 5004
Number of extensions: 73348
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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