Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1579
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 35 0.057
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 32 0.40
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 32 0.40
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 32 0.53
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.70
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 31 0.93
Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical pr... 31 1.2
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 31 1.2
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 31 1.2
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.2
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z93387-4|CAI91177.1| 333|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 30 2.1
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83109-6|CAB05522.1| 362|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical p... 29 5.0
AL021493-7|CAA16389.3| 345|Caenorhabditis elegans Hypothetical ... 29 5.0
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 29 5.0
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 29 5.0
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 29 5.0
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 29 5.0
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 6.6
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 8.7
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 8.7
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 35.1 bits (77), Expect = 0.057
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +2
Query: 476 TFPPHFTPPQLDMKIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCN 655
T P TP I T T +T T T + T T T+ T P TS+ T +
Sbjct: 258 TKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTST--TEPTTSTSTPTTTTTMQ 315
Query: 656 LMVHSARSP---TLLTTTMGFNAVVHNTPSRDTSSLELEVCS 772
S S T TTT + +T T+ +++E C+
Sbjct: 316 TTTPSTTSTPTTTSTTTTTSASTTTISTTKPPTTQIDIEKCT 357
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTS-----SRVNTPSCNLMVHSARSPTLLT 694
T +PT T T T T T T T P T+ S T + + PT T
Sbjct: 214 TTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTT 273
Query: 695 TTMGFNAVVHNTPSRDTSS 751
TT TP+ T++
Sbjct: 274 TTPTTTPTTTTTPTTTTTT 292
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Frame = +2
Query: 494 TPPQLDMKIIMLTNMPTLNT---DTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMV 664
T P + T PT T T T T TP TT T T++ T +
Sbjct: 110 TTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPT 169
Query: 665 HSARSPTLLTTT 700
+ +PT TTT
Sbjct: 170 TTTTTPTTTTTT 181
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMV--HSARSPTLLTTTM 703
T PT T T T T TT T ++ TP+ V + +PT TTT
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTT 231
Query: 704 GFNAVVHNTPSRDTS 748
TP+ T+
Sbjct: 232 TTPTTTTTTPTTTTT 246
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARS--PTLLTTTM 703
T PT T T T T TT T ++ TP+ + + PT TTT
Sbjct: 165 TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTP 224
Query: 704 GFNAVVHNTPSRDTSS 751
TP+ T++
Sbjct: 225 TTTTTTTTTPTTTTTT 240
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTT 700
T PT T T T T T T T P T + + + +PT TTT
Sbjct: 75 TTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTT 131
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVM-VTSSRVNTPSCNLMVHSARSPTLLTTTMG 706
T T T T T T TPATT T T+++ T +PT TT
Sbjct: 229 TTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTT 288
Query: 707 FNAVVHNTPSRDTSS 751
T S T++
Sbjct: 289 TTTTAKTTKSTTTTT 303
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTT 700
T T T T T TP TT T + +T + + +PT TTT
Sbjct: 262 TTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTT 318
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTT-TMG 706
T T T T T T TP T T P T + T + +PT TT T
Sbjct: 94 TPTTTTTTPTTTTETTTTPTT-ETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTT 152
Query: 707 FNAVVHNTPSRDTSS 751
TP+ T++
Sbjct: 153 TPTTTTTTPTTTTTT 167
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/111 (23%), Positives = 33/111 (29%), Gaps = 1/111 (0%)
Frame = +2
Query: 422 TRSPPTIQHQLFMKLQLFTFPPHFTPPQLDMKIIMLTNMPTLNTDTLTRLKTL-TPATTN 598
T +P T T P T P T T T T T +T TP TT
Sbjct: 99 TTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTT 158
Query: 599 LNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGFNAVVHNTPSRDTSS 751
T + T + T TTT TP+ T++
Sbjct: 159 TTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTT 209
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/74 (27%), Positives = 25/74 (33%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGF 709
T PT T T T T TP TT T + T + T TTT
Sbjct: 158 TTTPTTTTTTPTTTTT-TPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTV 216
Query: 710 NAVVHNTPSRDTSS 751
TP+ T++
Sbjct: 217 PTTTTTTPTTTTTT 230
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGF 709
T PT T T T TT T V ++ TP+ + +PT TTT
Sbjct: 186 TTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTT--TTTTPTTTTTTPTT 243
Query: 710 NAVVHNTPSRDTSS 751
T S T++
Sbjct: 244 TTTPATTTSETTTT 257
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 223 QEAPTYH-AAPAVHEASSYQAAQA-IHSAPTYHVAPA-GREAPTYHAAPAAHSATTYHTA 393
Q P + AAPAV +YQA QA + SAP APA G +A A AA +A Y A
Sbjct: 145 QSGPAFGGAAPAV--GGAYQAGQAAVESAPLGGAAPAGGYQASAPAAVEAAPAAGGYQAA 202
Query: 394 PAIHATSAIHQ 426
A H+
Sbjct: 203 APAGGAYAGHK 213
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 223 QEAPTYH-AAPAVHEASSYQAAQA-IHSAPTYHVAPA-GREAPTYHAAPAAHSATTYHTA 393
Q P + AAPAV +YQA QA + SAP APA G +A A AA +A Y A
Sbjct: 161 QSGPAFGGAAPAV--GGAYQAGQAAVESAPLGGAAPAGGYQASAPAAVEAAPAAGGYQAA 218
Query: 394 PAIHATSAIHQ 426
A H+
Sbjct: 219 APAGGAYAGHK 229
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 31.9 bits (69), Expect = 0.53
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 542 TLNTDTLTRLKTLT--PATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGFNA 715
T T+ + ++ T T P+TT +T+ + T++ PS + +SP ++TTT +
Sbjct: 367 TTTTEVIRQVTTTTKKPSTTT-STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTTTKTSP 425
Query: 716 VVHNTPSRDTSS 751
+PS TS+
Sbjct: 426 KPTTSPSTTTST 437
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.5 bits (68), Expect = 0.70
Identities = 26/126 (20%), Positives = 36/126 (28%)
Frame = +1
Query: 229 APTYHAAPAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAAHSATTYHTAPAIHA 408
AP +H H + A H +H +H APA H H H
Sbjct: 435 APAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTH--HG 492
Query: 409 TSAIHQVPAYXXXXXXXXXXXXXXXTALHAASAGHEDHYVDEYAHPKYGYSYSVEDPHTG 588
H PA+ H H H+ + + P + + H G
Sbjct: 493 HHGSHHSPAHHGHHGEHHHAPAHHGH--HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHG 550
Query: 589 DHKSQH 606
H S H
Sbjct: 551 HHGSHH 556
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 31.1 bits (67), Expect = 0.93
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Frame = +1
Query: 232 PTYHA-APAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPA----------AHSAT 378
PTY AP +SY+ + + P+Y V+ APTY P+ +H+A+
Sbjct: 266 PTYPTEAPTYPTTASYETTPS-YPEPSYQVSKKYPIAPTYETTPSYETTPSYLVQSHAAS 324
Query: 379 -------TYHTAPAIHATSAIHQVPAY 438
TY T P+ + T+ + VP+Y
Sbjct: 325 KKYPIAPTYETTPSSYDTTPSYSVPSY 351
>Z83106-2|CAB05494.1| 321|Caenorhabditis elegans Hypothetical
protein F22B8.3 protein.
Length = 321
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 74 IMARRYRLRISCAMIKPSTTRRPFTTLPYMLLPWHRLLLKSMLLQLFTPS 223
IM +Y + I CA I L + + HR K++++Q+FTP+
Sbjct: 216 IMLIQYTIIIYCATIMYLKMEEKLKLLSFAIRNLHRQFYKTLVIQIFTPT 265
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 539 PTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGFNAV 718
PT +T + T K T TT +T P T++ TP ++ S T TTT A
Sbjct: 585 PTTSTSSTTTQKPST-TTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTT-TTTTTSTTAT 642
Query: 719 VHNTPSRDTSS 751
P+ T+S
Sbjct: 643 TTPQPTTTTTS 653
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 539 PTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGFNAV 718
PT +T + T K T TT +T P T++ TP ++ S T TTT A
Sbjct: 585 PTTSTSSTTTQKPST-TTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTT-TTTTTSTTAT 642
Query: 719 VHNTPSRDTSS 751
P+ T+S
Sbjct: 643 TTPQPTTTTTS 653
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 515 KIIMLTNMPTLNTDTLTRLKTLTPATTNLN-TRPVMV---TSSRVNTPSCNLMVHSARSP 682
K ++T PTL + T+L T P+T + T P + T++ VN S + +P
Sbjct: 610 KAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNP 669
Query: 683 TLLTTTMGFNAVVHNTPSRDTSS 751
T TT V TP+ TS+
Sbjct: 670 TSPTTAPTVPPVTTTTPTTTTST 692
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2
Query: 515 KIIMLTNMPTLNTDTLTRLKTLTPATTNLN-TRPVMV---TSSRVNTPSCNLMVHSARSP 682
K ++T PTL + T+L T P+T + T P + T++ VN S + +P
Sbjct: 666 KAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNP 725
Query: 683 TLLTTTMGFNAVVHNTPSRDTSS 751
T TT V TP+ TS+
Sbjct: 726 TSPTTAPTVPPVTTTTPTTTTST 748
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = +2
Query: 494 TPPQLDMKIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSA 673
TP T PT T T T T +TT T P TS+ T + +
Sbjct: 64 TPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTT-PTTTTSTTTTTTTTT----TT 118
Query: 674 RSPTLLTTTM 703
+PT TTTM
Sbjct: 119 ATPTTTTTTM 128
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/77 (24%), Positives = 28/77 (36%)
Frame = +2
Query: 515 KIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLT 694
+I T T T+ +T T T +T T T++ TP+ S + T T
Sbjct: 44 EITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPT 103
Query: 695 TTMGFNAVVHNTPSRDT 745
TT T + T
Sbjct: 104 TTTSTTTTTTTTTTTAT 120
>Z93387-4|CAI91177.1| 333|Caenorhabditis elegans Hypothetical
protein T02E9.2b protein.
Length = 333
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 223 QEAPTYHAAPAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAA 366
Q+AP A A + S+ ++A ++ VA RE P Y AA AA
Sbjct: 140 QDAPAQVAEVATAQESAPPPSEAAYTGEQEVVASLAREEPNYQAAAAA 187
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 229 APTYHAAPAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAAHSATTYHT--APAI 402
AP Y A A + AA A AP APA AP Y AP +A + APA
Sbjct: 59 APAYAPALAAPAYAPGLAAPAFAPAPVVAAAPA--LAPAYAPAPVVAAAPAFAPAYAPAP 116
Query: 403 HATSAIHQVPA 435
A+ I PA
Sbjct: 117 VASPMIAAAPA 127
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +1
Query: 229 APTYHAAPAVHEASSYQAAQAIHSAPTY--HVAPAGREAPTYHAAPAAHSAT----TYHT 390
AP AAPA+ A +Y A + +AP + APA +P AAPA +A+
Sbjct: 83 APVVAAAPAL--APAYAPAPVVAAAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA 140
Query: 391 APAIHATSAIHQVPA 435
APA A VPA
Sbjct: 141 APAFAPAFAPAAVPA 155
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAAHSATTYHTAPAIHATSA 417
APA E + A A ++AP PA A APA + T APA T A
Sbjct: 646 APAAEETPAPAPAAAEYAAPVAEETPAPAPAAEETPAPAQAAEETPAPAPAAEETPA 702
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +1
Query: 229 APTYHAAPAVHEASSYQAAQAIHS-----APTYHVAPAGREAPTYHAAPAAHSATTYHTA 393
AP APA A+ Y A ++ AP PA A APA + T A
Sbjct: 527 APAAEPAPAAEAAAGYDAPSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPA 586
Query: 394 PAIHATSA 417
PA T A
Sbjct: 587 PAAEETPA 594
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAAHSATTYHTAPAIHATSA 417
APA E ++ A + AP PA +A APA + T +APA T A
Sbjct: 656 APAAAEYAAPVAEETPAPAPAAEETPAPAQAAEETPAPAPAAEETPASAPAAEETPA 712
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/66 (30%), Positives = 24/66 (36%)
Frame = +2
Query: 542 TLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTTMGFNAVV 721
T T T +T P TT L TRP + T S V T TT N
Sbjct: 472 TTTLPTTTTTQTPLPTTTILTTRPALTTQSTVFTTQAVTTQQQTTVVKTPTTQTPQNQTT 531
Query: 722 HNTPSR 739
+PS+
Sbjct: 532 TGSPSQ 537
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 223 QEAPTYHAAPAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAP-AAHSATTYHTAPA 399
+ AP A PA A + A A +AP APA AP AAP AA A AP
Sbjct: 474 EAAPAAPAEPAPAPAPA--PAPAPEAAPAPEPAPAPAPAPAPEAAPAAAPDAAPAEPAPV 531
Query: 400 IHATSAIHQVPA 435
A PA
Sbjct: 532 PEVAPAPAPAPA 543
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 527 LTNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPS 649
L N P++ T T+T T T T+ +T+ +SS ++PS
Sbjct: 663 LKNTPSVPTSTITTTSTTTNKPTSTSTKQTTSSSSTEHSPS 703
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 165 CSRGTGCS*NPCCSSYSHHPRGSNLPC 245
C+ G C N CC SY+ PR S C
Sbjct: 904 CATGYSCIQNQCCPSYNSAPRISVYTC 930
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 165 CSRGTGCS*NPCCSSYSHHPRGSNLPC 245
C+ G C N CC SY+ PR S C
Sbjct: 246 CATGYSCIQNQCCPSYNSAPRISVYTC 272
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 165 CSRGTGCS*NPCCSSYSHHPRGSNLPC 245
C+ G C N CC SY+ PR S C
Sbjct: 246 CATGYSCIQNQCCPSYNSAPRISVYTC 272
>Z83109-6|CAB05522.1| 362|Caenorhabditis elegans Hypothetical
protein F44G3.11 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 74 IMARRYRLRISCAMIKPSTTRRPFTTLPYMLLPWHRLLLKSMLLQLFTPS 223
IM +Y + I CA I L + HR K++++Q+FTP+
Sbjct: 232 IMLIQYTIIIYCATIMYLKMEEKLKLLSVSIRNLHRQFYKTLVIQIFTPT 281
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 542 TLNTDTLTRL-KTLTPATTNLNTRPVMVTSSRVNTP-SCNLMVHSARSPTLLTTTMGFNA 715
T T T+T +T TP TT T+P T + TP C+ + P ++ + G A
Sbjct: 329 TFKTTTITTTTQTTTPTTTATTTKPTTTTPTTTRTPVDCS----AKCDPFWVSYSDGCYA 384
Query: 716 VVHNTPSRDTSSL 754
+ T + +T+ L
Sbjct: 385 KIQGTATFETAKL 397
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Frame = +2
Query: 530 TNMPTLNTDT---LTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTT- 697
T PT T T T T TP TT S+ T S + +PT TT
Sbjct: 266 TTTPTTTTTTPTTTTTTPTTTPTTTTTTPTTTTTESTTTETTSTTTPTTTTTAPTTTTTA 325
Query: 698 -TMGFNAVVHNTPSRDTS 748
T F T ++ T+
Sbjct: 326 STTTFKTTTITTTTQTTT 343
>Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical
protein Y48E1B.7 protein.
Length = 751
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 538 HIRQHNDLHVQLRRREVRWKREQLELHEQL 449
H H DLH + EV + +E LEL ++L
Sbjct: 664 HHHHHMDLHEVVEEEEVGYHQEDLELEQEL 693
>AL021493-7|CAA16389.3| 345|Caenorhabditis elegans Hypothetical
protein Y51A2B.4 protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 195 PCCSSYSHHPRGSNLPCSPSSPRG 266
PC Y H PR ++LPC P S G
Sbjct: 229 PCHKDYRHWPR-ADLPCDPRSRTG 251
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPT-YHVAPA 327
AP+ H++S Y +Q + +PT Y V+PA
Sbjct: 223 APSSHDSSGYNTSQLVTQSPTNYTVSPA 250
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPTYHVAPAGREAPTYHAAPAAHS 372
+P + + QAA + A + H A RE+P++ AP+ HS
Sbjct: 928 SPTFESSVTMQAAAPLSPAASDHAEQA-RESPSFERAPSLHS 968
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPT-YHVAPA 327
AP+ H++S Y +Q + +PT Y V+PA
Sbjct: 222 APSSHDSSGYNTSQLVTQSPTNYTVSPA 249
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 APAVHEASSYQAAQAIHSAPT-YHVAPA 327
AP+ H++S Y +Q + +PT Y V+PA
Sbjct: 223 APSSHDSSGYNTSQLVTQSPTNYTVSPA 250
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 530 TNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTT 700
T T T T T T T +TT T V ++S ++T S + +PT TTT
Sbjct: 264 TEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTST-----TTTTPTTTTTT 315
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +2
Query: 491 FTPPQLDMKIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHS 670
F P + + + P +T T T T TT T T++ T + +
Sbjct: 67 FAIPPITFNAVCDPSKPKPSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTT 126
Query: 671 ARSPTLLTTT 700
+PT TTT
Sbjct: 127 TTTPTTTTTT 136
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 497 PPQLDMKIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVM 619
PP+ +K T+ T T T T T T A T T P++
Sbjct: 399 PPKNFVKATKSTSSSTTTTTTTTTTTTTTEAPTTTTTEPII 439
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 497 PPQLDMKIIMLTNMPTLNTDTLTRLKTLTPATTNLNTRPVM 619
PP+ +K T+ T T T T T T A T T P++
Sbjct: 399 PPKNFVKATKSTSSSTTTTTTTTTTTTTTEAPTTTTTEPII 439
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 542 TLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTT 700
T T T L+T + +TT T+P T++ + PS M S+ + T + T
Sbjct: 109 TTREQTTTTLRTTSASTTLSTTQPQTTTTTTI--PSTTTMTESSSTSTTASPT 159
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 542 TLNTDTLTRLKTLTPATTNLNTRPVMVTSSRVNTPSCNLMVHSARSPTLLTTT 700
T T T L+T + +TT T+P T++ + PS M S+ + T + T
Sbjct: 109 TTREQTTTTLRTTSASTTLSTTQPQTTTTTTI--PSTTTMTESSSTSTTASPT 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,251
Number of Sequences: 27780
Number of extensions: 397957
Number of successful extensions: 1593
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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